miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00455;mir-15;AAYZ01325292.1/263-348 9978:Ochotona princeps
(American pika)
Length = 86
Score = 95.6 bits (48), Expect = 6e-20
Identities = 60/64 (93%)
Strand = Plus / Plus
Query: 1 ctgtagcagcacatcatggtttacatactacagtcaagatgcgaatcattatttgctgct 60
||||||||||||||||||||||||||| || |||||| ||||||||||| ||||||||||
Sbjct: 12 ctgtagcagcacatcatggtttacataatatagtcaatatgcgaatcataatttgctgct 71
Query: 61 ctag 64
||||
Sbjct: 72 ctag 75
>RF00455;mir-15;AAPN01094471.1/3183-3268 9258:Ornithorhynchus
anatinus (platypus)
Length = 86
Score = 73.8 bits (37), Expect = 2e-13
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 4 tagcagcacatcatggtttacatactacagtcaagatgcgaatcattatttgctgct 60
||||||||||||||||||| ||| || || ||||||||||||||||||||||||||
Sbjct: 15 tagcagcacatcatggtttgcatggtatagccaagatgcgaatcattatttgctgct 71
>RF00455;mir-15;AADN02021066.1/63906-63821 9031:Gallus gallus
(chicken)
Length = 86
Score = 73.8 bits (37), Expect = 2e-13
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 4 tagcagcacatcatggtttacatactacagtcaagatgcgaatcattatttgctgct 60
||||||||||||||||||| ||| || ||| |||||||||||||||||||||||||
Sbjct: 15 tagcagcacatcatggtttgcatgctgtagtgaagatgcgaatcattatttgctgct 71
>RF00455;mir-15;ABQF01022934.1/39859-39944 59729:Taeniopygia
guttata
Length = 86
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 ctgtagcagcacatcatggttt 22
||||||||||||||||||||||
Sbjct: 12 ctgtagcagcacatcatggttt 33
>RF00455;mir-15;CT027989.8/7473-7560 7955:Danio rerio (zebrafish)
Length = 88
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 ctgtagcagcacatcatggttt 22
||||||||||||||||||||||
Sbjct: 12 ctgtagcagcacatcatggttt 33
>RF00455;mir-15;AAVX01576111.1/286-371 7868:Callorhinchus milii
(ghost shark)
Length = 86
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 ctgtagcagcacatcatggttt 22
||||||||||||||||||||||
Sbjct: 12 ctgtagcagcacatcatggttt 33
>RF00455;mir-15;AAFR03046999.1/49599-49513 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 87
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 40 tgcgaatcattatttgctgct 60
|||||||||||||||||||||
Sbjct: 52 tgcgaatcattatttgctgct 72
>RF00455;mir-15;AADN02013299.1/17575-17492 9031:Gallus gallus
(chicken)
Length = 84
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 2 tgtagcagcacatcatggttt 22
|||||||||||||||||||||
Sbjct: 13 tgtagcagcacatcatggttt 33
>RF00455;mir-15;AAVX01142701.1/355-269 7868:Callorhinchus milii
(ghost shark)
Length = 87
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 2 tgtagcagcacatcatggttt 22
|||||||||||||||||||||
Sbjct: 13 tgtagcagcacatcatggttt 33
