miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AY853252.1/217307-217173 4513:Hordeum vulgare
Length = 135
Score = 54.9 bits (27), Expect = 2e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 61 ttttagtgatagatacatccgtatctagawaaa 93
|||||||| |||||||||||||||||||| |||
Sbjct: 67 ttttagtgttagatacatccgtatctagataaa 99
>RF00906;MIR1122;EU862588.1/607-710 4516:Hordeum bulbosum
Length = 104
Score = 52.9 bits (26), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 62 tttagtgatagatacatccgtatctagawaaa 93
||||||| |||||||||||||||||||| |||
Sbjct: 37 tttagtgttagatacatccgtatctagataaa 68
>RF00906;MIR1122;AY485644.1/84291-84425 4568:Triticum monococcum
Length = 135
Score = 48.8 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 60 attttagtgatagatacatccgtatcta 87
||||||||| ||||||||||||||||||
Sbjct: 66 attttagtgttagatacatccgtatcta 93
>RF00906;MIR1122;CT009625.1/8885-8999 37682:Aegilops tauschii
Length = 115
Score = 48.8 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 45 aatgcatctagatgaattttagtgatagatacatcc 80
|||| ||||||||| |||||||| ||||||||||||
Sbjct: 75 aatgtatctagatgtattttagttatagatacatcc 40
>RF00906;MIR1122;EU660901.1/93085-92951 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 46.8 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 70 tagatacatccgtatctagawaaagct 96
|||||||||||||||||||| ||||||
Sbjct: 76 tagatacatccgtatctagacaaagct 102
>RF00906;MIR1122;EF540321.1/236564-236678 4571:Triticum turgidum
Length = 115
Score = 46.8 bits (23), Expect = 6e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 50 atctagatgaattttagtgatagatacatcc 80
||||||||| |||||||| ||||||||||||
Sbjct: 46 atctagatgtattttagttatagatacatcc 76
>RF00906;MIR1122;L41869.1/3010-3134 4513:Hordeum vulgare
Length = 125
Score = 46.8 bits (23), Expect = 6e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 50 atctagatgaattttagtgatagatacatcc 80
||||||||| |||||||| ||||||||||||
Sbjct: 46 atctagatgtattttagttatagatacatcc 76
>RF00906;MIR1122;EU862571.1/695-592 98113:Hordeum murinum subsp.
glaucum
Length = 104
Score = 44.8 bits (22), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 70 tagatacatccgtatctagawaaa 93
|||||||||||||||||||| |||
Sbjct: 60 tagatacatccgtatctagataaa 37