miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AY853252.1/217307-217173 4513:Hordeum vulgare
          Length = 135

 Score = 54.9 bits (27), Expect = 2e-07
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                           
Query: 61 ttttagtgatagatacatccgtatctagawaaa 93
          |||||||| |||||||||||||||||||| |||
Sbjct: 67 ttttagtgttagatacatccgtatctagataaa 99




>RF00906;MIR1122;EU862588.1/607-710 4516:Hordeum bulbosum
          Length = 104

 Score = 52.9 bits (26), Expect = 1e-06
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                          
Query: 62 tttagtgatagatacatccgtatctagawaaa 93
          ||||||| |||||||||||||||||||| |||
Sbjct: 37 tttagtgttagatacatccgtatctagataaa 68




>RF00906;MIR1122;AY485644.1/84291-84425 4568:Triticum monococcum
          Length = 135

 Score = 48.8 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 60 attttagtgatagatacatccgtatcta 87
          ||||||||| ||||||||||||||||||
Sbjct: 66 attttagtgttagatacatccgtatcta 93




>RF00906;MIR1122;CT009625.1/8885-8999 37682:Aegilops tauschii
          Length = 115

 Score = 48.8 bits (24), Expect = 2e-05
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                              
Query: 45 aatgcatctagatgaattttagtgatagatacatcc 80
          |||| ||||||||| |||||||| ||||||||||||
Sbjct: 75 aatgtatctagatgtattttagttatagatacatcc 40




>RF00906;MIR1122;EU660901.1/93085-92951 4565:Triticum aestivum
           (bread wheat)
          Length = 135

 Score = 46.8 bits (23), Expect = 6e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 70  tagatacatccgtatctagawaaagct 96
           |||||||||||||||||||| ||||||
Sbjct: 76  tagatacatccgtatctagacaaagct 102




>RF00906;MIR1122;EF540321.1/236564-236678 4571:Triticum turgidum
          Length = 115

 Score = 46.8 bits (23), Expect = 6e-05
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 50 atctagatgaattttagtgatagatacatcc 80
          ||||||||| |||||||| ||||||||||||
Sbjct: 46 atctagatgtattttagttatagatacatcc 76




>RF00906;MIR1122;L41869.1/3010-3134 4513:Hordeum vulgare
          Length = 125

 Score = 46.8 bits (23), Expect = 6e-05
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 50 atctagatgaattttagtgatagatacatcc 80
          ||||||||| |||||||| ||||||||||||
Sbjct: 46 atctagatgtattttagttatagatacatcc 76




>RF00906;MIR1122;EU862571.1/695-592 98113:Hordeum murinum subsp.
          glaucum
          Length = 104

 Score = 44.8 bits (22), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                  
Query: 70 tagatacatccgtatctagawaaa 93
          |||||||||||||||||||| |||
Sbjct: 60 tagatacatccgtatctagataaa 37