miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00258;mir-130;ABRQ01005074.1/1153-1071 9813:Procavia capensis
          (cape rock hyrax)
          Length = 83

 Score =  111 bits (56), Expect = 1e-24
 Identities = 62/64 (96%)
 Strand = Plus / Plus

                                                                      
Query: 1  gagctcttttcacattgtgctactgtctgcacctaccactagcagtgcaatgttaaaagg 60
          ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 10 gagctcttttcacattgtgctactgtctgcacctgtcactagcagtgcaatgttaaaagg 69

              
Query: 61 gcat 64
          ||||
Sbjct: 70 gcat 73




>RF00258;mir-130;AAPN01026753.1/160-77 9258:Ornithorhynchus
          anatinus (platypus)
          Length = 84

 Score = 73.8 bits (37), Expect = 2e-13
 Identities = 49/53 (92%)
 Strand = Plus / Plus

                                                               
Query: 1  gagctcttttcacattgtgctactgtctgcacctaccactagcagtgcaatgt 53
          |||||||||||||||||||||||||||||| ||   |||||||||||||||||
Sbjct: 10 gagctcttttcacattgtgctactgtctgcgcccgtcactagcagtgcaatgt 62




>RF00258;mir-130;AAWZ01013434.1/100052-99970 28377:Anolis
          carolinensis (green anole)
          Length = 83

 Score = 60.0 bits (30), Expect = 3e-09
 Identities = 54/62 (87%)
 Strand = Plus / Plus

                                                                      
Query: 3  gctcttttcacattgtgctactgtctgcacctaccactagcagtgcaatgttaaaagggc 62
          ||||||||||||||||||| |||||||  ||   | | ||||||||||||||||||||||
Sbjct: 12 gctcttttcacattgtgcttctgtctgtgcccgacccaagcagtgcaatgttaaaagggc 71

            
Query: 63 at 64
          ||
Sbjct: 72 at 73




>RF00258;mir-130;AL928914.15/23540-23459 10090:Mus musculus (house
          mouse)
          Length = 82

 Score = 56.0 bits (28), Expect = 5e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 1  gagctcttttcacattgtgctactgtct 28
          ||||||||||||||||||||||||||||
Sbjct: 10 gagctcttttcacattgtgctactgtct 37




>RF00258;mir-130;AAPN01410230.1/3519-3435 9258:Ornithorhynchus
          anatinus (platypus)
          Length = 85

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 41 agcagtgcaatgttaaaagggcat 64
          ||||||||||||||||||||||||
Sbjct: 51 agcagtgcaatgttaaaagggcat 74




>RF00258;mir-130;AAFR03045417.1/53001-53085 13616:Monodelphis
          domestica (gray short-tailed opossum)
          Length = 85

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 41 agcagtgcaatgttaaaagggcat 64
          ||||||||||||||||||||||||
Sbjct: 51 agcagtgcaatgttaaaagggcat 74




>RF00258;mir-130;AAWZ01039186.1/8009-8092 28377:Anolis
          carolinensis (green anole)
          Length = 84

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                  
Query: 41 agcagtgcaatgttaaaagggcat 64
          ||||||||||||||||||||||||
Sbjct: 33 agcagtgcaatgttaaaagggcat 10




>RF00258;mir-130;ABQF01026522.1/2438-2357 59729:Taeniopygia
          guttata
          Length = 82

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 41 agcagtgcaatgttaaaagggcat 64
          ||||||||||||||||||||||||
Sbjct: 50 agcagtgcaatgttaaaagggcat 73




>RF00258;mir-130;AADN02025792.1/1337-1416 9031:Gallus gallus
          (chicken)
          Length = 80

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 41 agcagtgcaatgttaaaagggcat 64
          ||||||||||||||||||||||||
Sbjct: 47 agcagtgcaatgttaaaagggcat 70




>RF00258;mir-130;AC091299.2/31403-31320 7955:Danio rerio
          (zebrafish)
          Length = 84

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 41 agcagtgcaatgttaaaagggcat 64
          ||||||||||||||||||||||||
Sbjct: 51 agcagtgcaatgttaaaagggcat 74




>RF00258;mir-130;AAFR03064223.1/4789-4711 13616:Monodelphis
          domestica (gray short-tailed opossum)
          Length = 79

 Score = 46.1 bits (23), Expect = 5e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 42 gcagtgcaatgttaaaagggcat 64
          |||||||||||||||||||||||
Sbjct: 48 gcagtgcaatgttaaaagggcat 70