miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00258;mir-130;ABRQ01005074.1/1153-1071 9813:Procavia capensis
(cape rock hyrax)
Length = 83
Score = 111 bits (56), Expect = 1e-24
Identities = 62/64 (96%)
Strand = Plus / Plus
Query: 1 gagctcttttcacattgtgctactgtctgcacctaccactagcagtgcaatgttaaaagg 60
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 10 gagctcttttcacattgtgctactgtctgcacctgtcactagcagtgcaatgttaaaagg 69
Query: 61 gcat 64
||||
Sbjct: 70 gcat 73
>RF00258;mir-130;AAPN01026753.1/160-77 9258:Ornithorhynchus
anatinus (platypus)
Length = 84
Score = 73.8 bits (37), Expect = 2e-13
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 1 gagctcttttcacattgtgctactgtctgcacctaccactagcagtgcaatgt 53
|||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 10 gagctcttttcacattgtgctactgtctgcgcccgtcactagcagtgcaatgt 62
>RF00258;mir-130;AAWZ01013434.1/100052-99970 28377:Anolis
carolinensis (green anole)
Length = 83
Score = 60.0 bits (30), Expect = 3e-09
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 3 gctcttttcacattgtgctactgtctgcacctaccactagcagtgcaatgttaaaagggc 62
||||||||||||||||||| ||||||| || | | ||||||||||||||||||||||
Sbjct: 12 gctcttttcacattgtgcttctgtctgtgcccgacccaagcagtgcaatgttaaaagggc 71
Query: 63 at 64
||
Sbjct: 72 at 73
>RF00258;mir-130;AL928914.15/23540-23459 10090:Mus musculus (house
mouse)
Length = 82
Score = 56.0 bits (28), Expect = 5e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 gagctcttttcacattgtgctactgtct 28
||||||||||||||||||||||||||||
Sbjct: 10 gagctcttttcacattgtgctactgtct 37
>RF00258;mir-130;AAPN01410230.1/3519-3435 9258:Ornithorhynchus
anatinus (platypus)
Length = 85
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 41 agcagtgcaatgttaaaagggcat 64
||||||||||||||||||||||||
Sbjct: 51 agcagtgcaatgttaaaagggcat 74
>RF00258;mir-130;AAFR03045417.1/53001-53085 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 85
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 41 agcagtgcaatgttaaaagggcat 64
||||||||||||||||||||||||
Sbjct: 51 agcagtgcaatgttaaaagggcat 74
>RF00258;mir-130;AAWZ01039186.1/8009-8092 28377:Anolis
carolinensis (green anole)
Length = 84
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 41 agcagtgcaatgttaaaagggcat 64
||||||||||||||||||||||||
Sbjct: 33 agcagtgcaatgttaaaagggcat 10
>RF00258;mir-130;ABQF01026522.1/2438-2357 59729:Taeniopygia
guttata
Length = 82
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 41 agcagtgcaatgttaaaagggcat 64
||||||||||||||||||||||||
Sbjct: 50 agcagtgcaatgttaaaagggcat 73
>RF00258;mir-130;AADN02025792.1/1337-1416 9031:Gallus gallus
(chicken)
Length = 80
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 41 agcagtgcaatgttaaaagggcat 64
||||||||||||||||||||||||
Sbjct: 47 agcagtgcaatgttaaaagggcat 70
>RF00258;mir-130;AC091299.2/31403-31320 7955:Danio rerio
(zebrafish)
Length = 84
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 41 agcagtgcaatgttaaaagggcat 64
||||||||||||||||||||||||
Sbjct: 51 agcagtgcaatgttaaaagggcat 74
>RF00258;mir-130;AAFR03064223.1/4789-4711 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 79
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 42 gcagtgcaatgttaaaagggcat 64
|||||||||||||||||||||||
Sbjct: 48 gcagtgcaatgttaaaagggcat 70
