miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AF525764.1/1593-1489 200361:Aegilops tauschii
subsp. strangulata
Length = 105
Score = 52.0 bits (26), Expect = 5e-06
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 259 caaagactattattttgggacggagggagtatta 292
||||||| |||||||||||||| |||||||||||
Sbjct: 35 caaagacaattattttgggacgtagggagtatta 2
>RF00906;MIR1122;DQ175992.1/50-154 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 50.1 bits (25), Expect = 2e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 261 aagactattattttgggacggagggagta 289
||||| |||||||||||||||||||||||
Sbjct: 73 aagacaattattttgggacggagggagta 101
>RF00906;MIR1122;AAAA02034555.1/16647-16527 39946:Oryza sativa
Indica Group
Length = 121
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 269 tattttgggacggagggagtattat 293
|||||||||||||||||||||||||
Sbjct: 58 tattttgggacggagggagtattat 34
Score = 48.1 bits (24), Expect = 8e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 270 attttgggacggagggagtattat 293
||||||||||||||||||||||||
Sbjct: 65 attttgggacggagggagtattat 88
>RF00906;MIR1122;AAAA02026282.1/2845-2975 39946:Oryza sativa Indica
Group
Length = 131
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 269 tattttgggacggagggagtattat 293
|||||||||||||||||||||||||
Sbjct: 25 tattttgggacggagggagtattat 1
>RF00906;MIR1122;AACV01024885.1/21195-21061 39947:Oryza sativa
Japonica Group
Length = 135
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 269 tattttgggacggagggagtattat 293
|||||||||||||||||||||||||
Sbjct: 25 tattttgggacggagggagtattat 1
>RF00906;MIR1122;AAAA02007975.1/29302-29380 39946:Oryza sativa
Indica Group
Length = 79
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 269 tattttgggacggagggagtattat 293
|||||||||||||||||||||||||
Sbjct: 25 tattttgggacggagggagtattat 1
>RF00906;MIR1122;AACV01003595.1/38638-38749 39947:Oryza sativa
Japonica Group
Length = 112
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 269 tattttgggacggagggagtattat 293
|||||||||||||||||||||||||
Sbjct: 88 tattttgggacggagggagtattat 112
>RF00906;MIR1122;AAAA02019483.1/16379-16491 39946:Oryza sativa
Indica Group
Length = 113
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 268 ttattttgggacggagggagtatta 292
|||||||||||||||||||||||||
Sbjct: 88 ttattttgggacggagggagtatta 112
>RF00906;MIR1122;FJ184990.1/3303-3406 4565:Triticum aestivum (bread
wheat)
Length = 104
Score = 48.1 bits (24), Expect = 8e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 268 ttattttgggacggagggagtatt 291
||||||||||||||||||||||||
Sbjct: 79 ttattttgggacggagggagtatt 102
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 268 ttattttgggacggagggagtat 290
|||||||||||||||||||||||
Sbjct: 26 ttattttgggacggagggagtat 4
>RF00906;MIR1122;DQ871219.1/106890-106994 85692:Triticum turgidum
subsp. dicoccoides
Length = 105
Score = 48.1 bits (24), Expect = 8e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 268 ttattttgggacggagggagtatt 291
||||||||||||||||||||||||
Sbjct: 26 ttattttgggacggagggagtatt 3
>RF00906;MIR1122;DQ445238.1/5626-5730 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 48.1 bits (24), Expect = 8e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 268 ttattttgggacggagggagtatt 291
||||||||||||||||||||||||
Sbjct: 80 ttattttgggacggagggagtatt 103
>RF00906;MIR1122;EU593539.1/914-1018 4513:Hordeum vulgare
Length = 105
Score = 48.1 bits (24), Expect = 8e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 268 ttattttgggacggagggagtatt 291
||||||||||||||||||||||||
Sbjct: 80 ttattttgggacggagggagtatt 103
>RF00906;MIR1122;AAAA02004035.1/49440-49310 39946:Oryza sativa
Indica Group
Length = 131
Score = 48.1 bits (24), Expect = 8e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 269 tattttgggacggagggagtatta 292
||||||||||||||||||||||||
Sbjct: 107 tattttgggacggagggagtatta 130
>RF00906;MIR1122;AAAA02000966.1/612-453 39946:Oryza sativa Indica
Group
Length = 160
Score = 48.1 bits (24), Expect = 8e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 267 attattttgggacggagggagtat 290
||||||||||||||||||||||||
Sbjct: 27 attattttgggacggagggagtat 4
>RF00906;MIR1122;AAAA02033927.1/2539-2391 39946:Oryza sativa Indica
Group
Length = 149
Score = 48.1 bits (24), Expect = 8e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 269 tattttgggacggagggagtatta 292
||||||||||||||||||||||||
Sbjct: 125 tattttgggacggagggagtatta 148
>RF00906;MIR1122;AAAA02026694.1/32137-32261 39946:Oryza sativa
Indica Group
Length = 125
Score = 48.1 bits (24), Expect = 8e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 269 tattttgggacggagggagtatta 292
||||||||||||||||||||||||
Sbjct: 101 tattttgggacggagggagtatta 124
>RF00906;MIR1122;AL831801.4/77594-77709 4530:Oryza sativa (rice)
Length = 116
Score = 48.1 bits (24), Expect = 8e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 269 tattttgggacggagggagtatta 292
||||||||||||||||||||||||
Sbjct: 92 tattttgggacggagggagtatta 115
>RF00906;MIR1122;AP003280.2/146720-146590 39947:Oryza sativa
Japonica Group
Length = 131
Score = 48.1 bits (24), Expect = 8e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 269 tattttgggacggagggagtatta 292
||||||||||||||||||||||||
Sbjct: 107 tattttgggacggagggagtatta 130
>RF00906;MIR1122;AAAA02028034.1/27580-27414 39946:Oryza sativa
Indica Group
Length = 167
Score = 48.1 bits (24), Expect = 8e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 269 tattttgggacggagggagtatta 292
||||||||||||||||||||||||
Sbjct: 143 tattttgggacggagggagtatta 166
>RF00906;MIR1122;AACV01024869.1/7310-7232 39947:Oryza sativa
Japonica Group
Length = 79
Score = 48.1 bits (24), Expect = 8e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 269 tattttgggacggagggagtatta 292
||||||||||||||||||||||||
Sbjct: 55 tattttgggacggagggagtatta 78
>RF00906;MIR1122;AAAA02018626.1/12551-12423 39946:Oryza sativa
Indica Group
Length = 129
Score = 48.1 bits (24), Expect = 8e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 268 ttattttgggacggagggagtatt 291
||||||||||||||||||||||||
Sbjct: 104 ttattttgggacggagggagtatt 127
>RF00906;MIR1122;AY947286.1/128-10 4530:Oryza sativa (rice)
Length = 119
Score = 48.1 bits (24), Expect = 8e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 269 tattttgggacggagggagtatta 292
||||||||||||||||||||||||
Sbjct: 25 tattttgggacggagggagtatta 2
>RF01058;MIR806;AP008208.1/6823788-6823544 39947:Oryza sativa
Japonica Group
Length = 245
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 268 ttattttgggacggagggagtat 290
|||||||||||||||||||||||
Sbjct: 223 ttattttgggacggagggagtat 245
>RF01058;MIR806;AP008208.1/24144061-24144300 39947:Oryza sativa
Japonica Group
Length = 240
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 268 ttattttgggacggagggagtat 290
|||||||||||||||||||||||
Sbjct: 23 ttattttgggacggagggagtat 1
>RF01058;MIR806;AACV01025022.1/35011-35254 39947:Oryza sativa
Japonica Group
Length = 244
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 268 ttattttgggacggagggagtat 290
|||||||||||||||||||||||
Sbjct: 23 ttattttgggacggagggagtat 1
>RF01058;MIR806;AAAA02004537.1/25464-25706 39946:Oryza sativa Indica
Group
Length = 243
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 268 ttattttgggacggagggagtat 290
|||||||||||||||||||||||
Sbjct: 23 ttattttgggacggagggagtat 1
>RF01058;MIR806;AACV01004890.1/11000-11239 39947:Oryza sativa
Japonica Group
Length = 240
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 268 ttattttgggacggagggagtat 290
|||||||||||||||||||||||
Sbjct: 218 ttattttgggacggagggagtat 240
>RF01058;MIR806;AAAA02009876.1/3121-2881 39946:Oryza sativa Indica
Group
Length = 241
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 268 ttattttgggacggagggagtat 290
|||||||||||||||||||||||
Sbjct: 219 ttattttgggacggagggagtat 241
>RF00906;MIR1122;ABXC01006480.1/93142-93031 4558:Sorghum bicolor
(sorghum)
Length = 112
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 268 ttattttgggacggagggagtat 290
|||||||||||||||||||||||
Sbjct: 26 ttattttgggacggagggagtat 4
>RF00906;MIR1122;U29095.1/333-439 4565:Triticum aestivum (bread
wheat)
Length = 107
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 268 ttattttgggacggagggagtat 290
|||||||||||||||||||||||
Sbjct: 26 ttattttgggacggagggagtat 4
>RF00906;MIR1122;AJ400714.1/3663-3767 4565:Triticum aestivum (bread
wheat)
Length = 105
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 268 ttattttgggacggagggagtat 290
|||||||||||||||||||||||
Sbjct: 80 ttattttgggacggagggagtat 102
>RF00906;MIR1122;DQ267106.1/62901-62968 4572:Triticum urartu
Length = 68
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 268 ttattttgggacggagggagtat 290
|||||||||||||||||||||||
Sbjct: 26 ttattttgggacggagggagtat 4
>RF00906;MIR1122;AF488415.1/78603-78755 4568:Triticum monococcum
Length = 153
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 268 ttattttgggacggagggagtat 290
|||||||||||||||||||||||
Sbjct: 128 ttattttgggacggagggagtat 150
>RF00906;MIR1122;DQ537336.1/120340-120474 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 267 attattttgggacggagggagtattat 293
|||||||| ||||||||||||||||||
Sbjct: 109 attatttttggacggagggagtattat 135
>RF00906;MIR1122;AY235464.1/714-838 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 269 tattttgggacggagggagtatt 291
|||||||||||||||||||||||
Sbjct: 25 tattttgggacggagggagtatt 3
>RF00906;MIR1122;FJ491378.1/4581-4466 4550:Secale cereale (rye)
Length = 116
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 268 ttattttgggacggagggagtat 290
|||||||||||||||||||||||
Sbjct: 91 ttattttgggacggagggagtat 113
>RF00906;MIR1122;AF521177.1/81577-81474 4513:Hordeum vulgare
Length = 104
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 268 ttattttgggacggagggagtat 290
|||||||||||||||||||||||
Sbjct: 79 ttattttgggacggagggagtat 101
>RF00906;MIR1122;EU282755.1/953-849 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 268 ttattttgggacggagggagtat 290
|||||||||||||||||||||||
Sbjct: 80 ttattttgggacggagggagtat 102
>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
Length = 105
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 268 ttattttgggacggagggagtat 290
|||||||||||||||||||||||
Sbjct: 26 ttattttgggacggagggagtat 4
>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
Length = 105
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 268 ttattttgggacggagggagtat 290
|||||||||||||||||||||||
Sbjct: 26 ttattttgggacggagggagtat 4
>RF00906;MIR1122;EU282251.1/1314-1209 52152:Elymus repens
Length = 106
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 268 ttattttgggacggagggagtat 290
|||||||||||||||||||||||
Sbjct: 81 ttattttgggacggagggagtat 103
>RF00906;MIR1122;FJ374625.1/3001-2870 4573:Aegilops speltoides
Length = 132
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 268 ttattttgggacggagggagtat 290
|||||||||||||||||||||||
Sbjct: 26 ttattttgggacggagggagtat 4
>RF00906;MIR1122;AAAA02025635.1/7223-7330 39946:Oryza sativa Indica
Group
Length = 108
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 269 tattttgggacggagggagtatt 291
|||||||||||||||||||||||
Sbjct: 25 tattttgggacggagggagtatt 3
>RF00906;MIR1122;AACV01004030.1/351-512 39947:Oryza sativa Japonica
Group
Length = 162
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 269 tattttgggacggagggagtatt 291
|||||||||||||||||||||||
Sbjct: 138 tattttgggacggagggagtatt 160
>RF00906;MIR1122;AAAA02028442.1/1248-1113 39946:Oryza sativa Indica
Group
Length = 136
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 268 ttattttgggacggagggagtat 290
|||||||||||||||||||||||
Sbjct: 26 ttattttgggacggagggagtat 4
>RF00906;MIR1122;AAAA02018379.1/19319-19440 39946:Oryza sativa
Indica Group
Length = 122
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 268 ttattttgggacggagggagtat 290
|||||||||||||||||||||||
Sbjct: 97 ttattttgggacggagggagtat 119
>RF00906;MIR1122;AP008214.1/14410723-14410632 39947:Oryza sativa
Japonica Group
Length = 92
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 268 ttattttgggacggagggagtat 290
|||||||||||||||||||||||
Sbjct: 26 ttattttgggacggagggagtat 4
>RF00906;MIR1122;AACV01020861.1/25006-25108 39947:Oryza sativa
Japonica Group
Length = 103
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 268 ttattttgggacggagggagtat 290
|||||||||||||||||||||||
Sbjct: 26 ttattttgggacggagggagtat 4
>RF00906;MIR1122;AP003303.4/77673-77577 39947:Oryza sativa Japonica
Group
Length = 97
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 268 ttattttgggacggagggagtat 290
|||||||||||||||||||||||
Sbjct: 26 ttattttgggacggagggagtat 4
>RF00906;MIR1122;AP008207.1/22739295-22739406 39947:Oryza sativa
Japonica Group
Length = 112
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 269 tattttgggacggagggagtatt 291
|||||||||||||||||||||||
Sbjct: 88 tattttgggacggagggagtatt 110
>RF00906;MIR1122;AC079357.3/127350-127255 39947:Oryza sativa
Japonica Group
Length = 96
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 269 tattttgggacggagggagtatt 291
|||||||||||||||||||||||
Sbjct: 72 tattttgggacggagggagtatt 94
>RF00906;MIR1122;AACV01001981.1/7100-7193 39947:Oryza sativa
Japonica Group
Length = 94
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 268 ttattttgggacggagggagtat 290
|||||||||||||||||||||||
Sbjct: 26 ttattttgggacggagggagtat 4
>RF00906;MIR1122;AC226706.2/62906-62750 63629:Oryza minuta
Length = 157
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 269 tattttgggacggagggagtatt 291
|||||||||||||||||||||||
Sbjct: 133 tattttgggacggagggagtatt 155
>RF00906;MIR1122;AAAA02007660.1/3740-3838 39946:Oryza sativa Indica
Group
Length = 99
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 269 tattttgggacggagggagtatt 291
|||||||||||||||||||||||
Sbjct: 75 tattttgggacggagggagtatt 97
>RF00906;MIR1122;AP008215.1/21144119-21144034 39947:Oryza sativa
Japonica Group
Length = 86
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 269 tattttgggacggagggagtatt 291
|||||||||||||||||||||||
Sbjct: 25 tattttgggacggagggagtatt 3
