miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AF521177.1/27342-27466 4513:Hordeum vulgare
Length = 125
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 attttgggacggagggagtatgaa 34
||||||||||||||||||||||||
Sbjct: 102 attttgggacggagggagtatgaa 125
>RF00906;MIR1122;FJ374625.1/3001-2870 4573:Aegilops speltoides
Length = 132
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 11 attttgggacggagggagtatgaa 34
||||||||||||||||||||||||
Sbjct: 24 attttgggacggagggagtatgaa 1
>RF00906;MIR1122;CR954190.2/110040-110176 3880:Medicago truncatula
(barrel medic)
Length = 137
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 10 cattttgggacggagggagtatg 32
|||||||||||||||||||||||
Sbjct: 25 cattttgggacggagggagtatg 3
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 cattttgggacggagggagtat 31
||||||||||||||||||||||
Sbjct: 113 cattttgggacggagggagtat 134
>RF01058;MIR806;AAAA02026783.1/9702-9457 39946:Oryza sativa Indica
Group
Length = 246
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 10 cattttgggacggagggagtat 31
||||||||||||||||||||||
Sbjct: 22 cattttgggacggagggagtat 1
>RF01058;MIR806;AAAA02017199.1/23024-23263 39946:Oryza sativa
Indica Group
Length = 240
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 10 cattttgggacggagggagtat 31
||||||||||||||||||||||
Sbjct: 22 cattttgggacggagggagtat 1
>RF00906;MIR1122;ABXC01006480.1/93142-93031 4558:Sorghum bicolor
(sorghum)
Length = 112
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 11 attttgggacggagggagtatg 32
||||||||||||||||||||||
Sbjct: 24 attttgggacggagggagtatg 3
>RF00906;MIR1122;AACV01022102.1/8073-7952 39947:Oryza sativa
Japonica Group
Length = 122
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 12 ttttgggacggagggagtatga 33
||||||||||||||||||||||
Sbjct: 23 ttttgggacggagggagtatga 2
>RF00906;MIR1122;AAAA02028442.1/1248-1113 39946:Oryza sativa
Indica Group
Length = 136
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 11 attttgggacggagggagtatg 32
||||||||||||||||||||||
Sbjct: 24 attttgggacggagggagtatg 3
>RF00906;MIR1122;AAAA02018379.1/19319-19440 39946:Oryza sativa
Indica Group
Length = 122
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 attttgggacggagggagtatg 32
||||||||||||||||||||||
Sbjct: 99 attttgggacggagggagtatg 120
>RF00906;MIR1122;AC215820.3/114332-114188 4537:Oryza punctata
Length = 145
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 11 attttgggacggagggagtatg 32
||||||||||||||||||||||
Sbjct: 24 attttgggacggagggagtatg 3
>RF00906;MIR1122;AP008214.1/14410723-14410632 39947:Oryza sativa
Japonica Group
Length = 92
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 11 attttgggacggagggagtatg 32
||||||||||||||||||||||
Sbjct: 24 attttgggacggagggagtatg 3
>RF00906;MIR1122;AL831801.4/77594-77709 4530:Oryza sativa (rice)
Length = 116
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 10 cattttgggacggagggagtat 31
||||||||||||||||||||||
Sbjct: 25 cattttgggacggagggagtat 4
>RF00906;MIR1122;AAAA02030464.1/12601-12722 39946:Oryza sativa
Indica Group
Length = 122
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 12 ttttgggacggagggagtatga 33
||||||||||||||||||||||
Sbjct: 23 ttttgggacggagggagtatga 2
>RF00906;MIR1122;AACV01020861.1/25006-25108 39947:Oryza sativa
Japonica Group
Length = 103
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 11 attttgggacggagggagtatg 32
||||||||||||||||||||||
Sbjct: 24 attttgggacggagggagtatg 3
>RF00906;MIR1122;AP003303.4/77673-77577 39947:Oryza sativa
Japonica Group
Length = 97
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 11 attttgggacggagggagtatg 32
||||||||||||||||||||||
Sbjct: 24 attttgggacggagggagtatg 3
>RF00906;MIR1122;AAAA02022032.1/23143-22996 39946:Oryza sativa
Indica Group
Length = 148
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 ttttgggacggagggagtatga 33
||||||||||||||||||||||
Sbjct: 126 ttttgggacggagggagtatga 147
>RF00906;MIR1122;AP005421.3/127890-127779 39947:Oryza sativa
Japonica Group
Length = 112
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 11 attttgggacggagggagtatg 32
||||||||||||||||||||||
Sbjct: 24 attttgggacggagggagtatg 3
>RF00906;MIR1122;AACV01001981.1/7100-7193 39947:Oryza sativa
Japonica Group
Length = 94
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 11 attttgggacggagggagtatg 32
||||||||||||||||||||||
Sbjct: 24 attttgggacggagggagtatg 3
>RF00906;MIR1122;AL662938.3/6940-7051 39947:Oryza sativa Japonica
Group
Length = 112
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 10 cattttgggacggagggagtat 31
||||||||||||||||||||||
Sbjct: 25 cattttgggacggagggagtat 4
>RF00906;MIR1122;AP008215.1/18970521-18970611 39947:Oryza sativa
Japonica Group
Length = 91
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 11 attttgggacggagggagtatg 32
||||||||||||||||||||||
Sbjct: 24 attttgggacggagggagtatg 3
>RF00906;MIR1122;AACV01018660.1/8916-9023 39947:Oryza sativa
Japonica Group
Length = 108
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 10 cattttgggacggagggagtat 31
||||||||||||||||||||||
Sbjct: 25 cattttgggacggagggagtat 4
>RF00906;MIR1122;AC121366.4/55476-55582 39947:Oryza sativa
Japonica Group
Length = 107
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 11 attttgggacggagggagtatg 32
||||||||||||||||||||||
Sbjct: 24 attttgggacggagggagtatg 3
