miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00663;mir-183;ABRQ01279950.1/461-562 9813:Procavia capensis
(cape rock hyrax)
Length = 102
Score = 129 bits (65), Expect = 5e-30
Identities = 68/69 (98%)
Strand = Plus / Plus
Query: 1 ctgtgtatggcactggtagaattcactgtgaacagtctcggtcagtgaattaccgaaggg 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 14 ctgtgtatggcactggtagaattcactgtgaacagtctcagtcagtgaattaccgaaggg 73
Query: 61 ccataaaca 69
|||||||||
Sbjct: 74 ccataaaca 82
>RF00663;mir-183;AAVX01005658.1/413-514 7868:Callorhinchus milii
(ghost shark)
Length = 102
Score = 73.8 bits (37), Expect = 2e-13
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 1 ctgtgtatggcactggtagaattcactgtgaacagtctcggtcagtgaattaccgaaggg 60
|||||||||||||||||||||||||||||||| | | | ||||||||||||| ||||
Sbjct: 14 ctgtgtatggcactggtagaattcactgtgaaaacacacaatcagtgaattaccataggg 73
Query: 61 ccataaaca 69
|||||||||
Sbjct: 74 ccataaaca 82
>RF00663;mir-183;BAAF04047675.1/11891-11992 8090:Oryzias latipes
(Japanese medaka)
Length = 102
Score = 60.0 bits (30), Expect = 4e-09
Identities = 62/70 (88%), Gaps = 2/70 (2%)
Strand = Plus / Plus
Query: 1 ctgtgtatggcactggtagaattcactgtgaacag-tctcggtcagtgaattaccgaagg 59
||||||||||||||||||||||||||||| |||| ||| ||||||||||||| |||
Sbjct: 14 ctgtgtatggcactggtagaattcactgt-cacagcactctatcagtgaattaccatagg 72
Query: 60 gccataaaca 69
||||||||||
Sbjct: 73 gccataaaca 82
>RF00663;mir-183;CAAE01014715.1/320476-320375 99883:Tetraodon
nigroviridis
Length = 102
Score = 58.0 bits (29), Expect = 1e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 1 ctgtgtatggcactggtagaattcactgt 29
|||||||||||||||||||||||||||||
Sbjct: 14 ctgtgtatggcactggtagaattcactgt 42
>RF00663;mir-183;AABS01000291.1/71818-71726 7719:Ciona
intestinalis
Length = 93
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 3 gtgtatggcactggtagaattcactg 28
||||||||||||||||||||||||||
Sbjct: 16 gtgtatggcactggtagaattcactg 41
>RF00663;mir-183;CAAB01003233.1/13960-13861 31033:Takifugu
rubripes
Length = 100
Score = 50.1 bits (25), Expect = 3e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 ctgtgtatggcactggtagaattcactgt 29
|||| ||||||||||||||||||||||||
Sbjct: 14 ctgtttatggcactggtagaattcactgt 42
>RF00663;mir-183;ABEP02026797.1/6738-6838 7739:Branchiostoma
floridae (Florida lancelet)
Length = 101
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 tatggcactggtagaattcactg 28
|||||||||||||||||||||||
Sbjct: 19 tatggcactggtagaattcactg 41
>RF00663;mir-183;AADN02060414.1/1248-1299 9031:Gallus gallus
(chicken)
Length = 52
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 10 gcactggtagaattcactgtg 30
|||||||||||||||||||||
Sbjct: 1 gcactggtagaattcactgtg 21
