miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00672;mir-190;AAQQ01331788.1/1206-1291 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 86
Score = 143 bits (72), Expect = 4e-34
Identities = 75/76 (98%)
Strand = Plus / Plus
Query: 1 tgcttctgtgtgatatgtttgatattgggttgtttaattagaaaccaactaaatgtcaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tgcttctgtgtgatatgtttgatattgggttgtttaattagaaaccaactaaatgtcaaa 64
Query: 61 catattcttacagcag 76
|||||||||| |||||
Sbjct: 65 catattcttatagcag 80
>RF00672;mir-190;AAIY01445479.1/883-798 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 86
Score = 123 bits (62), Expect = 3e-28
Identities = 71/74 (95%)
Strand = Plus / Plus
Query: 1 tgcttctgtgtgatatgtttgatattgggttgtttaattagaaaccaactaaatgtcaaa 60
|||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||
Sbjct: 5 tgcttctgtgtgatatgtttgatattgggttgttgaattaggagccaactaaatgtcaaa 64
Query: 61 catattcttacagc 74
||||||||||||||
Sbjct: 65 catattcttacagc 78
>RF00672;mir-190;AANN01658794.1/906-991 9365:Erinaceus europaeus
(western European hedgehog)
Length = 86
Score = 121 bits (61), Expect = 1e-27
Identities = 73/77 (94%)
Strand = Plus / Plus
Query: 3 cttctgtgtgatatgtttgatattgggttgtttaattagaaaccaactaaatgtcaaaca 62
||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 7 cttctgtctgatatgtttgatattgggttgtttaattaggaaccaactacatgtcaaaca 66
Query: 63 tattcttacagcagtgg 79
|||| ||||||||||||
Sbjct: 67 tatttttacagcagtgg 83
>RF00672;mir-190;AAFR03052180.1/90862-90947 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 86
Score = 111 bits (56), Expect = 1e-24
Identities = 68/72 (94%)
Strand = Plus / Plus
Query: 3 cttctgtgtgatatgtttgatattgggttgtttaattagaaaccaactaaatgtcaaaca 62
||||||||||||||||||||||||||||||||| ||| | || |||||||||||||||||
Sbjct: 7 cttctgtgtgatatgtttgatattgggttgtttgattgggaatcaactaaatgtcaaaca 66
Query: 63 tattcttacagc 74
||||||||||||
Sbjct: 67 tattcttacagc 78
>RF00672;mir-190;AAYZ01218204.1/4143-4058 9978:Ochotona princeps
(American pika)
Length = 86
Score = 109 bits (55), Expect = 5e-24
Identities = 73/79 (92%)
Strand = Plus / Plus
Query: 2 gcttctgtgtgatatgtttgatattgggttgtttaattagaaaccaactaaatgtcaaac 61
|||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||
Sbjct: 6 gcttctgtgtgatatgtttgatattgagttgtttaactaggtaccaactaaatgtcaaac 65
Query: 62 atattcttacagcagtggg 80
||||||||| ||| |||||
Sbjct: 66 atattcttatagcggtggg 84
>RF00672;mir-190;AAGV020286131.1/1034-1117 9361:Dasypus
novemcinctus (nine-banded armadillo)
Length = 84
Score = 107 bits (54), Expect = 2e-23
Identities = 69/73 (94%), Gaps = 2/73 (2%)
Strand = Plus / Plus
Query: 5 tctgtgtgatatgtttgatattgggttgtttaattagaaaccaactaaatgtcaaacata 64
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
Sbjct: 9 tctgtgtgatatgtttgatattgggttgtttaactagaaatcaactaaatgtcaaac--a 66
Query: 65 ttcttacagcagt 77
|||||||||||||
Sbjct: 67 ttcttacagcagt 79
>RF00672;mir-190;AAHY01028992.1/83185-83270 10090:Mus musculus
(house mouse)
Length = 86
Score = 97.6 bits (49), Expect = 2e-20
Identities = 70/77 (90%)
Strand = Plus / Plus
Query: 1 tgcttctgtgtgatatgtttgatattgggttgtttaattagaaaccaactaaatgtcaaa 60
|||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct: 5 tgcttctgtgtgatatgtttgatattgggttgttaaattatgaaccaactgaatgtcaag 64
Query: 61 catattcttacagcagt 77
|||| ||| ||||||||
Sbjct: 65 catactctcacagcagt 81
>RF00672;mir-190;ABRQ01329400.1/1871-1957 9813:Procavia capensis
(cape rock hyrax)
Length = 87
Score = 97.6 bits (49), Expect = 2e-20
Identities = 72/77 (93%), Gaps = 2/77 (2%)
Strand = Plus / Plus
Query: 1 tgcttctgtgtgatatgtttgatattggg-ttgtttaatta-gaaaccaactaaatgtca 58
||||||||| ||||||||||||||||||| ||||||||||| | | ||||||||||||||
Sbjct: 5 tgcttctgtatgatatgtttgatattggggttgtttaattaaggagccaactaaatgtca 64
Query: 59 aacatattcttacagca 75
|||||||||||||||||
Sbjct: 65 aacatattcttacagca 81
>RF00672;mir-190;ABQF01057687.1/1255-1341 59729:Taeniopygia
guttata
Length = 87
Score = 85.7 bits (43), Expect = 8e-17
Identities = 65/71 (91%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 5 tctgtgtgatatgtttgatattgggttgtttaattagaaa-ccaactaaatgtcaaacat 63
||||| |||||||||||||||| |||||||| ||| |||| |||||||||| ||||||||
Sbjct: 9 tctgtctgatatgtttgatattaggttgttttattggaaaaccaactaaatatcaaacat 68
Query: 64 attcttacagc 74
|||||||||||
Sbjct: 69 attcttacagc 79
>RF00672;mir-190;AAVX01176080.1/200-287 7868:Callorhinchus milii
(ghost shark)
Length = 88
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 5 tctgtgtgatatgtttgatattgggttgttt 35
|||||||||||||||||||||| ||||||||
Sbjct: 9 tctgtgtgatatgtttgatattaggttgttt 39
>RF00672;mir-190;AAPN01024655.1/497-583 9258:Ornithorhynchus
anatinus (platypus)
Length = 87
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 5 tctgtgtgatatgtttgatattgggttgtt 34
|||||||||||||||||||||| |||||||
Sbjct: 9 tctgtgtgatatgtttgatattaggttgtt 38
>RF00672;mir-190;CAAE01015044.1/472022-472113 99883:Tetraodon
nigroviridis
Length = 92
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 6 ctgtgtgatatgtttgatattgggttgtt 34
||||||||||||||||||||| |||||||
Sbjct: 10 ctgtgtgatatgtttgatattcggttgtt 38
>RF00672;mir-190;BAAF04125730.1/5227-5318 8090:Oryzias latipes
(Japanese medaka)
Length = 92
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 6 ctgtgtgatatgtttgatattgggttgtt 34
||||||||||||||||||||| |||||||
Sbjct: 10 ctgtgtgatatgtttgatattcggttgtt 38
>RF00672;mir-190;CAAB01003167.1/3482-3391 31033:Takifugu rubripes
Length = 92
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 6 ctgtgtgatatgtttgatattgggttgttta 36
|||| |||||||||||||||| |||||||||
Sbjct: 10 ctgtttgatatgtttgatattcggttgttta 40
>RF00672;mir-190;ABEP02029385.1/31054-30970 7739:Branchiostoma
floridae (Florida lancelet)
Length = 85
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 4 ttctgtgtgatatgtttgatattgggttgtt 34
||||| ||||||||||||||||| |||||||
Sbjct: 8 ttctgggtgatatgtttgatatttggttgtt 38
