miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00130;mir-192;ABRP01030089.1/479-588 132908:Pteropus vampyrus
(large flying fox)
Length = 110
Score = 99.6 bits (50), Expect = 4e-21
Identities = 60/62 (96%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 1 ctgacctatgaattgacagccagtgctcttgtct-ccctctggctgccaattccataggt 59
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 24 ctgacctatgagttgacagccagtgctcttgtctcccctctggctgccaattccataggt 83
Query: 60 ca 61
||
Sbjct: 84 ca 85
>RF00130;mir-192;AC127556.4/107222-107331 10090:Mus musculus
(house mouse)
Length = 110
Score = 91.7 bits (46), Expect = 9e-19
Identities = 59/62 (95%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 1 ctgacctatgaattgacagccagtgctcttgtctc-cctctggctgccaattccataggt 59
|||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||
Sbjct: 24 ctgacctatgaattgacagccagtactcttttctctcctctggctgccaattccataggt 83
Query: 60 ca 61
||
Sbjct: 84 ca 85
>RF00130;mir-192;ABRO01037016.1/11465-11572 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 108
Score = 89.7 bits (45), Expect = 3e-18
Identities = 58/61 (95%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 1 ctgacctatgaattgacagccagtgctcttgtctccctctggctgccaattccataggtc 60
|||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||
Sbjct: 24 ctgacctatgaattgacagccagtgcgct-gtctccccctggctgccaattccataggtc 82
Query: 61 a 61
|
Sbjct: 83 a 83
>RF00130;mir-192;ABRQ01130986.1/8285-8394 9813:Procavia capensis
(cape rock hyrax)
Length = 110
Score = 75.8 bits (38), Expect = 5e-14
Identities = 57/62 (91%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 1 ctgacctatgaattgacagccagtgctcttgtct-ccctctggctgccaattccataggt 59
|||||||||||||||||||||||||| || | || |||| ||||||||||||||||||||
Sbjct: 24 ctgacctatgaattgacagccagtgccctcggctcccctttggctgccaattccataggt 83
Query: 60 ca 61
||
Sbjct: 84 ca 85
>RF00130;mir-192;AAYZ01125558.1/348-240 9978:Ochotona princeps
(American pika)
Length = 109
Score = 67.9 bits (34), Expect = 1e-11
Identities = 57/62 (91%), Gaps = 2/62 (3%)
Strand = Plus / Plus
Query: 1 ctgacctatgaattgacagccagtgctcttgtct-ccctctggctgccaattccataggt 59
|||||||||||||||||||||||||| | |||| ||||||||||||||||| |||||||
Sbjct: 24 ctgacctatgaattgacagccagtgc-cccgtctgccctctggctgccaattgcataggt 82
Query: 60 ca 61
||
Sbjct: 83 ca 84
>RF00130;mir-192;AAIY01704218.1/882-773 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 110
Score = 67.9 bits (34), Expect = 1e-11
Identities = 56/62 (90%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 1 ctgacctatgaattgacagccagtgctcttgtct-ccctctggctgccaattccataggt 59
|||||||||||||||||||||||||| | | || |||||||||||||||| ||||||||
Sbjct: 24 ctgacctatgaattgacagccagtgccttgggctcccctctggctgccaataccataggt 83
Query: 60 ca 61
||
Sbjct: 84 ca 85
>RF00130;mir-192;AANN01720898.1/1196-1090 9365:Erinaceus europaeus
(western European hedgehog)
Length = 107
Score = 65.9 bits (33), Expect = 5e-11
Identities = 56/61 (91%), Gaps = 2/61 (3%)
Strand = Plus / Plus
Query: 1 ctgacctatgaattgacagccagtgctcttgtctccctctggctgccaattccataggtc 60
||||||||||| |||||||||||||| | | || ||||||||||||||||||||||||||
Sbjct: 24 ctgacctatgacttgacagccagtgc-cctctc-ccctctggctgccaattccataggtc 81
Query: 61 a 61
|
Sbjct: 82 a 82
>RF00130;mir-192;ABQO011016737.1/1874-1763 9315:Macropus eugenii
(tammar wallaby)
Length = 112
Score = 60.0 bits (30), Expect = 3e-09
Identities = 52/57 (91%), Gaps = 3/57 (5%)
Strand = Plus / Plus
Query: 7 tatgaattgacagccagtgctcttgtctccct--ctggctgccaattccataggtca 61
|||||||||||||||||| ||| | ||||||| |||||||||||||||||||||||
Sbjct: 32 tatgaattgacagccagtactcat-tctccctttctggctgccaattccataggtca 87
>RF00130;mir-192;AAPE01041994.1/454-563 59463:Myotis lucifugus
(little brown bat)
Length = 110
Score = 56.0 bits (28), Expect = 5e-08
Identities = 50/56 (89%), Gaps = 1/56 (1%)
Strand = Plus / Plus
Query: 5 cctatgaattgacagccagtgctcttgtct-ccctctggctgccaattccataggt 59
||||||||||||||||||| ||||||| | |||||||||||||||| |||||||
Sbjct: 28 cctatgaattgacagccaggtctcttgtttcccctctggctgccaatggcataggt 83
>RF00130;mir-192;BX248510.4/109218-109112 7955:Danio rerio
(zebrafish)
Length = 107
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 2 tgacctatgaattgacagccagtg 25
||||||||||||||||||||||||
Sbjct: 24 tgacctatgaattgacagccagtg 47
>RF00130;mir-192;CAAE01014650.1/773661-773759 99883:Tetraodon
nigroviridis
Length = 99
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 2 tgacctatgaattgacagccagt 24
|||||||||||||||||||||||
Sbjct: 18 tgacctatgaattgacagccagt 40
>RF00130;mir-192;CAAB01000046.1/113260-113358 31033:Takifugu
rubripes
Length = 99
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 2 tgacctatgaattgacagccagt 24
|||||||||||||||||||||||
Sbjct: 18 tgacctatgaattgacagccagt 40
>RF00130;mir-192;BAAF04033818.1/3323-3429 8090:Oryzias latipes
(Japanese medaka)
Length = 107
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 2 tgacctatgaattgacagccagt 24
|||||||||||||||||||||||
Sbjct: 25 tgacctatgaattgacagccagt 47
