miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01895;mir-193;ABRO01253416.1/598-499 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 100
Score = 143 bits (72), Expect = 4e-34
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 1 gggagctgagggctgggtctttgcgggcgagatgagggtgtcagttcaactggcctacaa 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 gggagttgagggctgggtctttgcgggcgagatgagggtgtcagttcaactggcctacaa 70
Query: 61 agtcccagtcttcggccccc 80
|||||||||| |||||||||
Sbjct: 71 agtcccagtcctcggccccc 90
>RF01895;mir-193;AANU01121342.1/16348-16249 9544:Macaca mulatta
(rhesus monkey)
Length = 100
Score = 137 bits (69), Expect = 2e-32
Identities = 78/81 (96%)
Strand = Plus / Plus
Query: 1 gggagctgagggctgggtctttgcgggcgagatgagggtgtcagttcaactggcctacaa 60
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 11 gggagctgagggctgggtctttgcgggcgagatgagggtgtcggatcaactggcctacaa 70
Query: 61 agtcccagtcttcggcccccg 81
|||||||||| ||||||||||
Sbjct: 71 agtcccagtcctcggcccccg 91
>RF01895;mir-193;ABRQ01070765.1/8182-8083 9813:Procavia capensis
(cape rock hyrax)
Length = 100
Score = 127 bits (64), Expect = 2e-29
Identities = 76/80 (95%)
Strand = Plus / Plus
Query: 1 gggagctgagggctgggtctttgcgggcgagatgagggtgtcagttcaactggcctacaa 60
|||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 11 gggagctgagagctgggtctttgcgggcgagatgagggtgtcgtttcaactggcctacaa 70
Query: 61 agtcccagtcttcggccccc 80
|||||||||| |||||||||
Sbjct: 71 agtcccagtcctcggccccc 90
>RF01895;mir-193;ABRP01134350.1/232-133 132908:Pteropus vampyrus
(large flying fox)
Length = 100
Score = 119 bits (60), Expect = 6e-27
Identities = 72/76 (94%)
Strand = Plus / Plus
Query: 1 gggagctgagggctgggtctttgcgggcgagatgagggtgtcagttcaactggcctacaa 60
||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 11 gggagctgaggactgggtctttgcgggcgagatgagggtgtcgattcaactggcctacaa 70
Query: 61 agtcccagtcttcggc 76
|||||||||| |||||
Sbjct: 71 agtcccagtcctcggc 86
>RF01895;mir-193;CAAA01067610.1/28843-28744 10090:Mus musculus
(house mouse)
Length = 100
Score = 119 bits (60), Expect = 6e-27
Identities = 75/80 (93%)
Strand = Plus / Plus
Query: 1 gggagctgagggctgggtctttgcgggcgagatgagggtgtcagttcaactggcctacaa 60
|||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 11 gggagctgagagctgggtctttgcgggcaagatgagagtgtcagttcaactggcctacaa 70
Query: 61 agtcccagtcttcggccccc 80
|||||||||| |||| ||||
Sbjct: 71 agtcccagtcctcggtcccc 90
>RF01895;mir-193;ABQO011024331.1/609-510 9315:Macropus eugenii
(tammar wallaby)
Length = 100
Score = 113 bits (57), Expect = 3e-25
Identities = 66/69 (95%)
Strand = Plus / Plus
Query: 1 gggagctgagggctgggtctttgcgggcgagatgagggtgtcagttcaactggcctacaa 60
||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 11 gggagttgaggactgggtctttgcgggcgagatgagggtgtcaattcaactggcctacaa 70
Query: 61 agtcccagt 69
|||||||||
Sbjct: 71 agtcccagt 79
>RF01895;mir-193;AAFR03044744.1/21764-21665 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 100
Score = 105 bits (53), Expect = 8e-23
Identities = 65/69 (94%)
Strand = Plus / Plus
Query: 1 gggagctgagggctgggtctttgcgggcgagatgagggtgtcagttcaactggcctacaa 60
||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 11 gggagttgaggattgggtctttgtgggcgagatgagggtgtcagttcaactggcctacaa 70
Query: 61 agtcccagt 69
|||||||||
Sbjct: 71 agtcccagt 79
>RF01895;mir-193;AADN02030009.1/500-602 9031:Gallus gallus
(chicken)
Length = 103
Score = 77.8 bits (39), Expect = 2e-14
Identities = 64/70 (91%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 3 gagctgagggctgggtctttgcgggcgagatgag-ggt--gtcagttcaactggcctaca 59
|||||||||||||||||||||||||||||||||| ||| || |||||||||||||||
Sbjct: 13 gagctgagggctgggtctttgcgggcgagatgagaggttcgtgtcttcaactggcctaca 72
Query: 60 aagtcccagt 69
||||||||||
Sbjct: 73 aagtcccagt 82
>RF01895;mir-193;AAWZ01016511.1/69007-69110 28377:Anolis
carolinensis (green anole)
Length = 104
Score = 61.9 bits (31), Expect = 1e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 45 ttcaactggcctacaaagtcccagtcttcggcccc 79
|||||||||||||||||||||||||| ||||||||
Sbjct: 59 ttcaactggcctacaaagtcccagtcctcggcccc 93
>RF01895;mir-193;BX663498.9/9090-8989 7955:Danio rerio (zebrafish)
Length = 102
Score = 60.0 bits (30), Expect = 4e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 45 ttcaactggcctacaaagtcccagtcttcggccc 78
||||||||||||||||||||||||| ||||||||
Sbjct: 58 ttcaactggcctacaaagtcccagttttcggccc 91
>RF01895;mir-193;CAAB01000713.1/34967-35068 31033:Takifugu
rubripes
Length = 102
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 44 gttcaactggcctacaaagtcccagtct 71
||||||||||||||||||||||||||||
Sbjct: 57 gttcaactggcctacaaagtcccagtct 84
>RF01895;mir-193;AANH01003096.1/75841-75740 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 102
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 44 gttcaactggcctacaaagtcccagt 69
||||||||||||||||||||||||||
Sbjct: 57 gttcaactggcctacaaagtcccagt 82
>RF01895;mir-193;BAAF04031349.1/1289-1188 8090:Oryzias latipes
(Japanese medaka)
Length = 102
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 45 ttcaactggcctacaaagtcccagt 69
|||||||||||||||||||||||||
Sbjct: 58 ttcaactggcctacaaagtcccagt 82
>RF01895;mir-193;CAAK05050431.1/18938-19042 7955:Danio rerio
(zebrafish)
Length = 105
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 46 tcaactggcctacaaagtcccagt 69
||||||||||||||||||||||||
Sbjct: 62 tcaactggcctacaaagtcccagt 85
