miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00256;mir-196;AAGU02055285.1/1599-1508 9785:Loxodonta africana
(African savanna elephant)
Length = 92
Score = 107 bits (54), Expect = 2e-23
Identities = 66/70 (94%)
Strand = Plus / Plus
Query: 1 gtgagttaggtagtttcatgttgttgggcctggatttctgaacacaacgacattaaacca 60
|||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct: 13 gtgaattaggtagtttcatgttgttgggcctgggtttctgaacacaacgacatcaaacca 72
Query: 61 cccgactcac 70
||||| ||||
Sbjct: 73 cccgattcac 82
>RF00256;mir-196;AAFR03029824.1/20829-20920 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 92
Score = 67.9 bits (34), Expect = 2e-11
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 5 gttaggtagtttcatgttgttgggcctggatttctgaacacaacgacattaaaccacc 62
||||||||||||| ||||||||||||| ||||||| ||||||| |||| ||||||||
Sbjct: 17 gttaggtagtttcctgttgttgggcctagatttctaaacacaagaacatcaaaccacc 74
>RF00256;mir-196;AADN02070198.1/2795-2886 9031:Gallus gallus
(chicken)
Length = 92
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 gtgagttaggtagtttcatgttgttgggc 29
|||| ||||||||||||||||||||||||
Sbjct: 13 gtgaattaggtagtttcatgttgttgggc 41
>RF00256;mir-196;AAWZ01035904.1/53611-53705 28377:Anolis
carolinensis (green anole)
Length = 95
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 gtgagttaggtagtttcatgttgttggg 28
|||| |||||||||||||||||||||||
Sbjct: 13 gtgatttaggtagtttcatgttgttggg 40
>RF00256;mir-196;FJ497005.1/156594-156684 106881:Latimeria
menadoensis (Menado coelacanth)
Length = 91
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 gtgagttaggtagtttcatgttgttggg 28
|||| |||||||||||||||||||||||
Sbjct: 13 gtgatttaggtagtttcatgttgttggg 40
>RF00256;mir-196;FJ497006.1/141864-141954 106881:Latimeria
menadoensis (Menado coelacanth)
Length = 91
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 6 ttaggtagtttcatgttgttgggc 29
||||||||||||||||||||||||
Sbjct: 18 ttaggtagtttcatgttgttgggc 41
>RF00256;mir-196;AC132195.4/6836-6926 31136:Polypterus bichir
Length = 91
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 gtgagttaggtagtttcatgttgttggg 28
|||| |||||||||||||||||||||||
Sbjct: 12 gtgatttaggtagtttcatgttgttggg 39
>RF00256;mir-196;AF224262.1/4259-4348 7792:Heterodontus francisci
(horn shark)
Length = 90
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 gtgagttaggtagtttcatgttgttggg 28
|||| |||||||||||||||||||||||
Sbjct: 13 gtgatttaggtagtttcatgttgttggg 40
>RF00256;mir-196;ABRQ01001823.1/1565-1475 9813:Procavia capensis
(cape rock hyrax)
Length = 91
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 ttaggtagtttcatgttgttggg 28
|||||||||||||||||||||||
Sbjct: 18 ttaggtagtttcatgttgttggg 40
>RF00256;mir-196;AADN02000989.1/695-605 9031:Gallus gallus
(chicken)
Length = 91
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 ttaggtagtttcatgttgttggg 28
|||||||||||||||||||||||
Sbjct: 18 ttaggtagtttcatgttgttggg 40
>RF00256;mir-196;AADN02023992.1/310-221 9031:Gallus gallus
(chicken)
Length = 90
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 ttaggtagtttcatgttgttggg 28
|||||||||||||||||||||||
Sbjct: 18 ttaggtagtttcatgttgttggg 40
>RF00256;mir-196;CR382300.12/76136-76225 7955:Danio rerio
(zebrafish)
Length = 90
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 ttaggtagtttcatgttgttggg 28
|||||||||||||||||||||||
Sbjct: 18 ttaggtagtttcatgttgttggg 40
>RF00256;mir-196;EU025682.1/4924-5014 8030:Salmo salar (Atlantic
salmon)
Length = 91
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 ttaggtagtttcatgttgttggg 28
|||||||||||||||||||||||
Sbjct: 18 ttaggtagtttcatgttgttggg 40
>RF00256;mir-196;BAAE01222104.1/303-214 8090:Oryzias latipes
(Japanese medaka)
Length = 90
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 ttaggtagtttcatgttgttggg 28
|||||||||||||||||||||||
Sbjct: 18 ttaggtagtttcatgttgttggg 40
>RF00256;mir-196;AB232922.1/118684-118594 8090:Oryzias latipes
(Japanese medaka)
Length = 91
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 ttaggtagtttcatgttgttggg 28
|||||||||||||||||||||||
Sbjct: 18 ttaggtagtttcatgttgttggg 40
>RF00256;mir-196;AAVX01058829.1/1428-1517 7868:Callorhinchus milii
(ghost shark)
Length = 90
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 ttaggtagtttcatgttgttggg 28
|||||||||||||||||||||||
Sbjct: 18 ttaggtagtttcatgttgttggg 40
>RF00256;mir-196;AF464190.1/27447-27540 7757:Petromyzon marinus
(sea lamprey)
Length = 94
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 taggtagtttcatgttgttggg 28
||||||||||||||||||||||
Sbjct: 19 taggtagtttcatgttgttggg 40
>RF00256;mir-196;BX927395.18/57996-57904 7955:Danio rerio
(zebrafish)
Length = 93
Score = 42.1 bits (21), Expect = 9e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1 gtgagttaggtagtttcatgttgttgggc 29
|||| ||||||||||||| ||||||||||
Sbjct: 13 gtgatttaggtagtttcaagttgttgggc 41
>RF00256;mir-196;EU025707.1/41141-41230 8030:Salmo salar (Atlantic
salmon)
Length = 90
Score = 42.1 bits (21), Expect = 9e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1 gtgagttaggtagtttcatgttgttgggc 29
|||| ||||||||||||| ||||||||||
Sbjct: 13 gtgatttaggtagtttcaagttgttgggc 41