miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00646;mir-204;AAQQ01222771.1/904-1005 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 102
Score = 147 bits (74), Expect = 3e-35
Identities = 83/86 (96%)
Strand = Plus / Plus
Query: 1 tgtgacttgtgggcttccctttgtcatcctttgcctagggctctgagtggggcagggact 60
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 13 tgtgacttgtgggcttccctttgtcatcctttgcctagggctttgagtggggcagggaca 72
Query: 61 gcaaaggggtgctcagttgtcacctc 86
||||||||||||||||| ||||||||
Sbjct: 73 gcaaaggggtgctcagtcgtcacctc 98
>RF00646;mir-204;ABRQ01444608.1/1068-1169 9813:Procavia capensis
(cape rock hyrax)
Length = 102
Score = 147 bits (74), Expect = 3e-35
Identities = 83/86 (96%)
Strand = Plus / Plus
Query: 1 tgtgacttgtgggcttccctttgtcatcctttgcctagggctctgagtggggcagggact 60
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tgtgacctgtgggcttccctttgtcatcctttgcctagggctctgagtggggcagggaca 72
Query: 61 gcaaaggggtgctcagttgtcacctc 86
|||||||| |||||||||||||||||
Sbjct: 73 gcaaagggctgctcagttgtcacctc 98
>RF00646;mir-204;AAKN02016253.1/66521-66421 10141:Cavia porcellus
(domestic guinea pig)
Length = 101
Score = 133 bits (67), Expect = 4e-31
Identities = 80/83 (96%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 2 gtgacttgtgggcttccctttgtcatcctttgcctagggctctgagtggggcagggactg 61
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 14 gtgacttgtgggcttccctttgtcatcctttgcctagggctctga-tagggcagggactg 72
Query: 62 caaaggggtgctcagttgtcacc 84
||||||||| |||||||||||||
Sbjct: 73 caaaggggtactcagttgtcacc 95
>RF00646;mir-204;AY866210.1/448-549 9600:Pongo pygmaeus (Bornean
orangutan)
Length = 102
Score = 125 bits (63), Expect = 1e-28
Identities = 78/83 (93%)
Strand = Plus / Plus
Query: 1 tgtgacttgtgggcttccctttgtcatcctttgcctagggctctgagtggggcagggact 60
|||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 13 tgtgacttgtggacttccctttgtcatccttcgcctagggctctgagcagggcagggaca 72
Query: 61 gcaaaggggtgctcagttgtcac 83
|||||||||||||||||||||||
Sbjct: 73 gcaaaggggtgctcagttgtcac 95
>RF00646;mir-204;AAGW01512306.1/1681-1580 9986:Oryctolagus
cuniculus (rabbit)
Length = 102
Score = 119 bits (60), Expect = 6e-27
Identities = 78/84 (92%)
Strand = Plus / Plus
Query: 1 tgtgacttgtgggcttccctttgtcatcctttgcctagggctctgagtggggcagggact 60
||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 13 tgtgactggtgggcttccctttgtcatcctttgcctagggttctgagcagggcagggaca 72
Query: 61 gcaaaggggtgctcagttgtcacc 84
||||||||||||||||| ||||||
Sbjct: 73 gcaaaggggtgctcagtcgtcacc 96
>RF00646;mir-204;AAHY01062369.1/281-180 10090:Mus musculus (house
mouse)
Length = 102
Score = 117 bits (59), Expect = 2e-26
Identities = 80/87 (91%)
Strand = Plus / Plus
Query: 1 tgtgacttgtgggcttccctttgtcatcctttgcctagggctctgagtggggcagggact 60
|||||| |||||||||||||||||||||||||||||||| ||||||||| |||| ||||
Sbjct: 13 tgtgacctgtgggcttccctttgtcatcctttgcctaggcctctgagtgaggcaaggaca 72
Query: 61 gcaaaggggtgctcagttgtcacctct 87
||||||||| ||||||| |||||||||
Sbjct: 73 gcaaaggggggctcagtggtcacctct 99
>RF00646;mir-204;AANN01198559.1/1392-1493 9365:Erinaceus europaeus
(western European hedgehog)
Length = 102
Score = 111 bits (56), Expect = 1e-24
Identities = 68/72 (94%)
Strand = Plus / Plus
Query: 1 tgtgacttgtgggcttccctttgtcatcctttgcctagggctctgagtggggcagggact 60
|||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||
Sbjct: 13 tgtgacttgtgggcttccctttgtcatcctttgcctagggttatgagtagggcagggaca 72
Query: 61 gcaaaggggtgc 72
||||||||||||
Sbjct: 73 gcaaaggggtgc 84
>RF00646;mir-204;AAGV020630976.1/4916-5016 9361:Dasypus
novemcinctus (nine-banded armadillo)
Length = 101
Score = 93.7 bits (47), Expect = 3e-19
Identities = 72/79 (91%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 8 tgtgggcttccctttgtcatcctttgcctagggctctgagtggggcagggactgcaaagg 67
|||||||||||||||||||||||||||||| || || ||||||||||||||| ||||||
Sbjct: 20 tgtgggcttccctttgtcatcctttgccta-ggatccgagtggggcagggacaacaaagg 78
Query: 68 ggtgctcagttgtcacctc 86
||||||||| ||||||||
Sbjct: 79 ggtgctcaggcgtcacctc 97
>RF00646;mir-204;AAFR03022736.1/24229-24330 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 102
Score = 81.8 bits (41), Expect = 1e-15
Identities = 71/81 (87%)
Strand = Plus / Plus
Query: 1 tgtgacttgtgggcttccctttgtcatcctttgcctagggctctgagtggggcagggact 60
|||||| ||||||||||||||||||||||| ||||| | || |||||||||||||||
Sbjct: 13 tgtgacctgtgggcttccctttgtcatcctatgcctggaaatcagagtggggcagggaca 72
Query: 61 gcaaaggggtgctcagttgtc 81
|||||||| ||||||| ||||
Sbjct: 73 gcaaagggatgctcagctgtc 93
>RF00646;mir-204;AADN02040397.1/21108-21007 9031:Gallus gallus
(chicken)
Length = 102
Score = 73.8 bits (37), Expect = 3e-13
Identities = 70/81 (86%)
Strand = Plus / Plus
Query: 1 tgtgacttgtgggcttccctttgtcatcctttgcctagggctctgagtggggcagggact 60
|||||| ||||||||||||||||||||||| ||||| | | || |||| |||||||||
Sbjct: 13 tgtgacctgtgggcttccctttgtcatcctatgcctggagatcacagtgaggcagggaca 72
Query: 61 gcaaaggggtgctcagttgtc 81
|||||||| ||||||| ||||
Sbjct: 73 gcaaagggatgctcagctgtc 93
>RF00646;mir-204;AAWZ01036299.1/27929-27828 28377:Anolis
carolinensis (green anole)
Length = 102
Score = 67.9 bits (34), Expect = 2e-11
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 3 tgacttgtgggcttccctttgtcatcctttgcctagggctctgagtggggcagggactgc 62
|||| ||||||||||||||||||||||| ||||| | | || || | ||||||||| ||
Sbjct: 15 tgacctgtgggcttccctttgtcatcctatgcctggagatcgcagagaggcagggacagc 74
Query: 63 aaaggggtgctcag 76
||||||||||||||
Sbjct: 75 aaaggggtgctcag 88
>RF00646;mir-204;CAAE01014555.1/947630-947730 99883:Tetraodon
nigroviridis
Length = 101
Score = 63.9 bits (32), Expect = 3e-10
Identities = 66/76 (86%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 1 tgtgacttgtgggcttccctttgtcatcctttgcctagggctctgagtggggcagggact 60
|||||| ||||||||||||||||||||||| ||||| | |||| || | |||||||||
Sbjct: 13 tgtgacctgtgggcttccctttgtcatcctatgcctggagctcgga-taaggcagggaca 71
Query: 61 gcaaaggggtgctcag 76
|||||||| |||||||
Sbjct: 72 gcaaagggatgctcag 87
>RF00646;mir-204;BAAE01064700.1/3191-3291 8090:Oryzias latipes
(Japanese medaka)
Length = 101
Score = 63.9 bits (32), Expect = 3e-10
Identities = 72/84 (85%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 1 tgtgacttgtgggcttccctttgtcatcctttgcctagggctctgagtggggcagggact 60
|||||| ||||||||||||||||||||||| ||||| | ||| || | |||||||||
Sbjct: 13 tgtgacctgtgggcttccctttgtcatcctatgcctggagct-tggataaggcagggaca 71
Query: 61 gcaaaggggtgctcagttgtcacc 84
|||||||| ||||||| |||||||
Sbjct: 72 gcaaagggatgctcagctgtcacc 95
>RF00646;mir-204;AANH01001574.1/139065-138965 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 101
Score = 54.0 bits (27), Expect = 3e-07
Identities = 64/75 (85%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 10 tgggcttccctttgtcatcctttgcctagggctctgagtggggcagggactgcaaagggg 69
||||||||||||||||||||| ||||| | |||| || | ||||||||| ||||||||
Sbjct: 22 tgggcttccctttgtcatcctatgcctggagctcgga-taaggcagggacagcaaaggga 80
Query: 70 tgctcagttgtcacc 84
|||||| |||||||
Sbjct: 81 tgctcaactgtcacc 95
>RF00646;mir-204;AAVX01164390.1/969-1070 7868:Callorhinchus milii
(ghost shark)
Length = 102
Score = 52.0 bits (26), Expect = 1e-06
Identities = 68/82 (82%)
Strand = Plus / Plus
Query: 1 tgtgacttgtgggcttccctttgtcatcctttgcctagggctctgagtggggcagggact 60
|||||| |||||| |||||||||||||||| ||||| || | | |||| |||||||
Sbjct: 13 tgtgacctgtgggtttccctttgtcatcctatgcctgggagtatcagtgaggcagggggg 72
Query: 61 gcaaaggggtgctcagttgtca 82
||||||||||||||| |||||
Sbjct: 73 acaaaggggtgctcagctgtca 94
>RF00646;mir-204;AAFR03028287.1/51900-52003 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 104
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 1 tgtgacttgtgggcttccctttgtcatcctttgcct 36
||||||| |||| ||||||||||||||||| |||||
Sbjct: 13 tgtgactcgtggacttccctttgtcatcctatgcct 48
>RF00646;mir-204;BX323080.10/77917-77816 7955:Danio rerio
(zebrafish)
Length = 102
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 1 tgtgacttgtgggcttccctttgtcatcctttgcct 36
|||||| ||||| ||||||||||||||||| |||||
Sbjct: 13 tgtgacctgtggacttccctttgtcatcctatgcct 48
>RF00646;mir-204;AANH01001880.1/194334-194437 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 104
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 1 tgtgacttgtgggcttccctttgtcatcctttgcct 36
|||||||| ||| ||||||||||||||||| |||||
Sbjct: 13 tgtgacttatggccttccctttgtcatcctatgcct 48
>RF00646;mir-204;AANH01011880.1/65628-65527 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 102
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 9 gtgggcttccctttgtcatcctttgcct 36
||||| ||||||||||||||||||||||
Sbjct: 21 gtgggtttccctttgtcatcctttgcct 48
>RF00646;mir-204;BAAE01000360.1/4392-4495 8090:Oryzias latipes
(Japanese medaka)
Length = 104
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 10 tgggcttccctttgtcatcctttgcct 36
||||||||||||||||||||| |||||
Sbjct: 22 tgggcttccctttgtcatcctatgcct 48
>RF00646;mir-204;AAVX01052255.1/1202-1305 7868:Callorhinchus milii
(ghost shark)
Length = 104
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 10 tgggcttccctttgtcatcctttgcct 36
||||||||||||||||||||| |||||
Sbjct: 22 tgggcttccctttgtcatcctatgcct 48
