miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00668;mir-302;ABRQ01753171.1/1212-1280 9813:Procavia capensis
(cape rock hyrax)
Length = 69
Score = 127 bits (64), Expect = 2e-29
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 1 ccaccacttaaacgtggatgtacttgctttgaaactataaaagtaagtgcttccatgttt 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 ccaccacttaaacgtggatgtacttgctttgaaactaaaaaagtaagtgcttccatgttt 60
Query: 61 tagtgatg 68
||||||||
Sbjct: 61 tagtgatg 68
>RF00668;mir-302;ABRR01131093.1/749-681 30538:Lama pacos (alpaca)
Length = 69
Score = 77.8 bits (39), Expect = 2e-14
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 18 atgtacttgctttgaaactataaaagtaagtgcttccatgttttagtgatg 68
|||| ||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 18 atgtgcttgctttgaaactaaaaaagtaagtgcttccatgtttttgtgatg 68
>RF00668;mir-302;AABR04095134.1/7301-7233 10116:Rattus norvegicus
(Norway rat)
Length = 69
Score = 71.9 bits (36), Expect = 9e-13
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 1 ccaccacttaaacgtggatgtacttgctttgaaactataaaagtaagtgcttccatgttt 60
||||||||||||||||| ||| ||||||||| ||| | |||||||||||||||||||||
Sbjct: 1 ccaccacttaaacgtggttgtccttgctttggaacgaagaaagtaagtgcttccatgttt 60
>RF00668;mir-302;AAPN01081641.1/13571-13636 9258:Ornithorhynchus
anatinus (platypus)
Length = 66
Score = 67.9 bits (34), Expect = 1e-11
Identities = 57/64 (89%), Gaps = 3/64 (4%)
Strand = Plus / Plus
Query: 5 cacttaaacgtggatgtacttgctttgaaactataaaagtaagtgcttccatgttttagt 64
||||||||||||||| ||||||||| ||| | |||||||||||||||||||||||||
Sbjct: 5 cacttaaacgtggataaacttgcttt---acttttaaagtaagtgcttccatgttttagt 61
Query: 65 gatg 68
||||
Sbjct: 62 gatg 65
>RF00668;mir-302;AAPY01684075.1/7919-7851 37347:Tupaia belangeri
(northern tree shrew)
Length = 69
Score = 63.9 bits (32), Expect = 2e-10
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 1 ccaccacttaaacgtggatgtacttgctttgaaactataaaagtaagtgcttccatgttt 60
||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||
Sbjct: 1 ccaccacttaaacgtgggagtacttgctttataacggggaaagtaagtgcttccatgttt 60
Query: 61 tagtgatg 68
| ||||||
Sbjct: 61 tggtgatg 68
>RF00668;mir-302;AAKN02038884.1/104365-104297 10141:Cavia
porcellus (domestic guinea pig)
Length = 69
Score = 63.9 bits (32), Expect = 2e-10
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 1 ccaccacttaaacgtggatgtacttgctttgaaactataaaagtaagtgcttccatgttt 60
|||||||||||||||||| |||||||||||| || |||||||||||||||||||||
Sbjct: 1 ccaccacttaaacgtggacgtacttgctttggaagcgagaaagtaagtgcttccatgttt 60
>RF00668;mir-302;AAFC03091296.1/1203-1135 9913:Bos taurus (cattle)
Length = 69
Score = 61.9 bits (31), Expect = 9e-10
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 6 acttaaacgtggatgtacttgctttgaaactataaaagtaagtgcttccatgttt 60
|||||||| |||||||||||||||| |||||| ||||| ||| ||||||| ||||
Sbjct: 6 acttaaacatggatgtacttgctttcaaactaaaaaaggaagcgcttccaagttt 60
>RF00668;mir-302;AAWR02036366.1/23003-22935 9796:Equus caballus
(horse)
Length = 69
Score = 56.0 bits (28), Expect = 6e-08
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 1 ccaccacttaaacgtggatgtacttgctttgaaactataaaagtaagtgcttccat 56
|||||||||||| |||| ||| |||||||||||| || ||||| |||| |||||||
Sbjct: 1 ccaccacttaaatgtgggtgttcttgctttgaaattaaaaaagaaagtacttccat 56
>RF00668;mir-302;ABRP01133978.1/7459-7391 132908:Pteropus vampyrus
(large flying fox)
Length = 69
Score = 52.0 bits (26), Expect = 9e-07
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 15 tggatgtacttgctttgaaactataaaagtaagtgcttccatgttttagtgatg 68
||||||| ||||| || ||||| ||||| ||||||||||||||||||| ||||
Sbjct: 15 tggatgtgcttgcactgtaactaaaaaaggaagtgcttccatgttttagcgatg 68
>RF00668;mir-302;AAYZ01300380.1/1601-1528 9978:Ochotona princeps
(American pika)
Length = 74
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 39 aaaagtaagtgcttccatgttttagt 64
||||||||||||||||||||||||||
Sbjct: 44 aaaagtaagtgcttccatgttttagt 69
>RF00668;mir-302;AAGW01417911.1/808-881 9986:Oryctolagus cuniculus
(rabbit)
Length = 74
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 39 aaaagtaagtgcttccatgttttagt 64
||||||||||||||||||||||||||
Sbjct: 44 aaaagtaagtgcttccatgttttagt 69
>RF00668;mir-302;AADN02009328.1/24168-24234 9031:Gallus gallus
(chicken)
Length = 67
Score = 52.0 bits (26), Expect = 9e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 39 aaaagtaagtgcttccatgttttagtgatg 68
||||| ||||||||||||||||||||||||
Sbjct: 37 aaaagaaagtgcttccatgttttagtgatg 66
>RF00668;mir-302;AADN02009328.1/24503-24571 9031:Gallus gallus
(chicken)
Length = 69
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 39 aaaagtaagtgcttccatgttttagt 64
||||||||||||||||||||||||||
Sbjct: 39 aaaagtaagtgcttccatgttttagt 64
>RF00668;mir-302;AADN02009328.1/23605-23673 9031:Gallus gallus
(chicken)
Length = 69
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 39 aaaagtaagtgcttccatgttttagt 64
||||||||||||||||||||||||||
Sbjct: 39 aaaagtaagtgcttccatgttttagt 64
>RF00668;mir-302;ABRN01333081.1/2250-2182 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 69
Score = 50.1 bits (25), Expect = 3e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 16 ggatgtacttgctttgaaactataaaagtaagtgctt 52
|||||| ||||||||||||||| |||| |||||||||
Sbjct: 16 ggatgtgcttgctttgaaactacaaaaataagtgctt 52
>RF00668;mir-302;ABRQ01753171.1/1044-1111 9813:Procavia capensis
(cape rock hyrax)
Length = 68
Score = 50.1 bits (25), Expect = 3e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 37 ataaaagtaagtgcttccatgttttagtg 65
|||||||||||||||||||||||| ||||
Sbjct: 36 ataaaagtaagtgcttccatgtttcagtg 64
>RF00668;mir-302;AAWR02000508.1/11188-11120 9796:Equus caballus
(horse)
Length = 69
Score = 48.1 bits (24), Expect = 1e-05
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 1 ccaccacttaaacgtggatgtacttgctttgaaactataaaagtaagtgcttccatgttt 60
|||||||||| || |||||| ||||||||||| |||| ||||| ||| || |||||||
Sbjct: 1 ccaccacttacacatggatgcacttgctttgacactaaaaaaggaagcactcgcatgttt 60
Query: 61 tagtgatg 68
|| |||||
Sbjct: 61 taatgatg 68
>RF00668;mir-302;AANN01821362.1/2593-2523 9365:Erinaceus europaeus
(western European hedgehog)
Length = 71
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 42 agtaagtgcttccatgttttagtg 65
||||||||||||||||||||||||
Sbjct: 44 agtaagtgcttccatgttttagtg 67
>RF00668;mir-302;ABRP01199153.1/3701-3634 132908:Pteropus vampyrus
(large flying fox)
Length = 68
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 42 agtaagtgcttccatgttttagtg 65
||||||||||||||||||||||||
Sbjct: 42 agtaagtgcttccatgttttagtg 65
>RF00668;mir-302;AAPY01419152.1/185-114 37347:Tupaia belangeri
(northern tree shrew)
Length = 72
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 42 agtaagtgcttccatgttttagtg 65
||||||||||||||||||||||||
Sbjct: 45 agtaagtgcttccatgttttagtg 68
>RF00668;mir-302;ABQF01043812.1/11235-11302 59729:Taeniopygia
guttata
Length = 68
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 42 agtaagtgcttccatgttttagtg 65
||||||||||||||||||||||||
Sbjct: 41 agtaagtgcttccatgttttagtg 64
>RF00668;mir-302;AAFR03016534.1/30254-30320 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 67
Score = 46.1 bits (23), Expect = 5e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 39 aaaagtaagtgcttccatgttttagtg 65
|||||||||||||||||||||| ||||
Sbjct: 37 aaaagtaagtgcttccatgtttcagtg 63
>RF00668;mir-302;AALT01320989.1/195-127 42254:Sorex araneus
(European shrew)
Length = 69
Score = 46.1 bits (23), Expect = 5e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 39 aaaagtaagtgcttccatgttttagtg 65
|||| ||||||||||||||||||||||
Sbjct: 40 aaaaataagtgcttccatgttttagtg 66
>RF00668;mir-302;ABRR01146281.1/7793-7724 30538:Lama pacos
(alpaca)
Length = 70
Score = 46.1 bits (23), Expect = 5e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 39 aaaagtaagtgcttccatgttttagtg 65
|||| ||||||||||||||||||||||
Sbjct: 41 aaaaataagtgcttccatgttttagtg 67
>RF00668;mir-302;AACN010299228.1/1232-1301 9615:Canis lupus
familiaris (dog)
Length = 70
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 42 agtaagtgcttccatgttttagt 64
|||||||||||||||||||||||
Sbjct: 43 agtaagtgcttccatgttttagt 65
>RF00668;mir-302;AAEX02017596.1/203439-203506 9615:Canis lupus
familiaris (dog)
Length = 68
Score = 46.1 bits (23), Expect = 5e-05
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 5 cacttaaacgtggatgtacttgctttgaaactataaaagtaagtgct 51
|||| ||| ||| |||||||||||| ||||||| ||||| |||||||
Sbjct: 5 cactcaaatgtgaatgtacttgcttggaaactaaaaaaggaagtgct 51
>RF00668;mir-302;ABRT010177693.1/1091-1020 9478:Tarsius syrichta
(Philippine tarsier)
Length = 72
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 42 agtaagtgcttccatgttttagt 64
|||||||||||||||||||||||
Sbjct: 45 agtaagtgcttccatgttttagt 67
>RF00668;mir-302;AC113952.9/51530-51463 10090:Mus musculus (house
mouse)
Length = 68
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 42 agtaagtgcttccatgttttagt 64
|||||||||||||||||||||||
Sbjct: 41 agtaagtgcttccatgttttagt 63
>RF00668;mir-302;ABRO01269686.1/11784-11711 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 74
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 42 agtaagtgcttccatgttttagt 64
|||||||||||||||||||||||
Sbjct: 47 agtaagtgcttccatgttttagt 69
>RF00668;mir-302;AAKN02038884.1/104612-104543 10141:Cavia
porcellus (domestic guinea pig)
Length = 70
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 42 agtaagtgcttccatgttttagt 64
|||||||||||||||||||||||
Sbjct: 43 agtaagtgcttccatgttttagt 65
>RF00668;mir-302;AADN02009328.1/23865-23929 9031:Gallus gallus
(chicken)
Length = 65
Score = 46.1 bits (23), Expect = 5e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 39 aaaagtaagtgcttccatgttttagtg 65
|||||||||||||||||||||| ||||
Sbjct: 35 aaaagtaagtgcttccatgtttcagtg 61
>RF00668;mir-302;AANN01821362.1/2160-2092 9365:Erinaceus europaeus
(western European hedgehog)
Length = 69
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 44 taagtgcttccatgttttagtg 65
||||||||||||||||||||||
Sbjct: 44 taagtgcttccatgttttagtg 65
>RF00668;mir-302;AANN01319001.1/1638-1703 9365:Erinaceus europaeus
(western European hedgehog)
Length = 66
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 4 ccacttaaacgtggatgtacttgctttgaa 33
||||||||||||| |||| |||||||||||
Sbjct: 1 ccacttaaacgtgaatgttcttgctttgaa 30
>RF00668;mir-302;AAIY01685397.1/7598-7532 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 67
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 39 aaaagtaagtgcttccatgttttagt 64
|||||||||||||||| |||||||||
Sbjct: 37 aaaagtaagtgcttccttgttttagt 62
>RF00668;mir-302;ABRQ01753171.1/907-976 9813:Procavia capensis
(cape rock hyrax)
Length = 70
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 39 aaaagtaagtgcttccatgttttagt 64
|||||||||||||||| |||||||||
Sbjct: 40 aaaagtaagtgcttccttgttttagt 65
>RF00668;mir-302;AAGW01417911.1/1285-1352 9986:Oryctolagus
cuniculus (rabbit)
Length = 68
Score = 42.1 bits (21), Expect = 8e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 37 ataaaagtaagtgcttccatgttttagtg 65
|||||| ||||||||||||||||| ||||
Sbjct: 37 ataaaaataagtgcttccatgtttgagtg 65
