miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;ABRQ01054366.1/133-211 9813:Procavia capensis
          (cape rock hyrax)
          Length = 79

 Score =  141 bits (71), Expect = 2e-33
 Identities = 77/79 (97%)
 Strand = Plus / Plus

                                                                      
Query: 3  ggtacttggagagaggtggtccgtggcgcgttcgctttatttatggcgcacattacacgg 62
          ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1  ggtacttggagagaggtggtccgtggcgcgttcgctttattcatggcgcacattacacgg 60

                             
Query: 63 tcgacctctttgcagtatc 81
          ||||||||||| |||||||
Sbjct: 61 tcgacctctttccagtatc 79




>RF00641;mir-154;ABRQ01054376.1/3637-3716 9813:Procavia capensis
          (cape rock hyrax)
          Length = 80

 Score = 56.0 bits (28), Expect = 7e-08
 Identities = 68/80 (85%), Gaps = 1/80 (1%)
 Strand = Plus / Plus

                                                                      
Query: 3  ggtacttggagagaggtggtccgtggcgcgttcgctttattta-tggcgcacattacacg 61
          ||||||||||| ||||| |||||||| | |||||| ||| ||| ||  || || ||||||
Sbjct: 1  ggtacttggagggaggttgtccgtggtgagttcgcattacttaatgatgcccaatacacg 60

                              
Query: 62 gtcgacctctttgcagtatc 81
          |||||||||||| |||||||
Sbjct: 61 gtcgacctcttttcagtatc 80




>RF00641;mir-154;AAQR01664930.1/163-240 30611:Otolemur garnettii
          (small-eared galago)
          Length = 78

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 57/67 (85%)
 Strand = Plus / Plus

                                                                      
Query: 13 gagaggtggtccgtggcgcgttcgctttatttatggcgcacattacacggtcgacctctt 72
          ||||||| | ||||||||||||||| | | |  || |||||| |||||||||||||||||
Sbjct: 10 gagaggtcgcccgtggcgcgttcgcataaatcttgccgcacaatacacggtcgacctctt 69

                 
Query: 73 tgcagta 79
          | |||||
Sbjct: 70 ttcagta 76