miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;ABRQ01054366.1/133-211 9813:Procavia capensis
(cape rock hyrax)
Length = 79
Score = 141 bits (71), Expect = 2e-33
Identities = 77/79 (97%)
Strand = Plus / Plus
Query: 3 ggtacttggagagaggtggtccgtggcgcgttcgctttatttatggcgcacattacacgg 62
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 ggtacttggagagaggtggtccgtggcgcgttcgctttattcatggcgcacattacacgg 60
Query: 63 tcgacctctttgcagtatc 81
||||||||||| |||||||
Sbjct: 61 tcgacctctttccagtatc 79
>RF00641;mir-154;ABRQ01054376.1/3637-3716 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 56.0 bits (28), Expect = 7e-08
Identities = 68/80 (85%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 3 ggtacttggagagaggtggtccgtggcgcgttcgctttattta-tggcgcacattacacg 61
||||||||||| ||||| |||||||| | |||||| ||| ||| || || || ||||||
Sbjct: 1 ggtacttggagggaggttgtccgtggtgagttcgcattacttaatgatgcccaatacacg 60
Query: 62 gtcgacctctttgcagtatc 81
|||||||||||| |||||||
Sbjct: 61 gtcgacctcttttcagtatc 80
>RF00641;mir-154;AAQR01664930.1/163-240 30611:Otolemur garnettii
(small-eared galago)
Length = 78
Score = 54.0 bits (27), Expect = 3e-07
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 13 gagaggtggtccgtggcgcgttcgctttatttatggcgcacattacacggtcgacctctt 72
||||||| | ||||||||||||||| | | | || |||||| |||||||||||||||||
Sbjct: 10 gagaggtcgcccgtggcgcgttcgcataaatcttgccgcacaatacacggtcgacctctt 69
Query: 73 tgcagta 79
| |||||
Sbjct: 70 ttcagta 76
