miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;AAEX02019639.1/134880-134959 9615:Canis lupus
familiaris (dog)
Length = 80
Score = 127 bits (64), Expect = 3e-29
Identities = 73/76 (96%)
Strand = Plus / Plus
Query: 13 ggtacctgaagagaggttttctgggtttctgtttctttaatgaagatgaaacacacctag 72
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||
Sbjct: 1 ggtacctgaagagaggttttctgggtttctgtttctttcatgaggatgaaacacacccag 60
Query: 73 ttaacctcttttccag 88
||||||||||||||||
Sbjct: 61 ttaacctcttttccag 76
>RF00641;mir-154;ABRQ01054366.1/1167-1246 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 127 bits (64), Expect = 3e-29
Identities = 76/80 (95%)
Strand = Plus / Plus
Query: 13 ggtacctgaagagaggttttctgggtttctgtttctttaatgaagatgaaacacacctag 72
|||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||| |
Sbjct: 1 ggtacccgaagagaggttttctgggtttctgtttctttattgatgatgaaacacacctgg 60
Query: 73 ttaacctcttttccagtatc 92
||||||||||||||||||||
Sbjct: 61 ttaacctcttttccagtatc 80
>RF00641;mir-154;AAQR01664929.1/14898-14977 30611:Otolemur
garnettii (small-eared galago)
Length = 80
Score = 103 bits (52), Expect = 4e-22
Identities = 73/80 (91%)
Strand = Plus / Plus
Query: 13 ggtacctgaagagaggttttctgggtttctgtttctttaatgaagatgaaacacacctag 72
||||||||||||||| ||||||||||| |||||||||||||| ||| |||||||||| |
Sbjct: 1 ggtacctgaagagagagtttctgggtttttgtttctttaatgaggatcaaacacacctgg 60
Query: 73 ttaacctcttttccagtatc 92
|||||||||||||||||||
Sbjct: 61 ataacctcttttccagtatc 80
>RF00641;mir-154;AAGW01360474.1/8073-8152 9986:Oryctolagus
cuniculus (rabbit)
Length = 80
Score = 103 bits (52), Expect = 4e-22
Identities = 73/80 (91%)
Strand = Plus / Plus
Query: 13 ggtacctgaagagaggttttctgggtttctgtttctttaatgaagatgaaacacacctag 72
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
Sbjct: 1 ggtacctgaagagaggttttctgggtttctgtttcttggatgaggatgaaacacacctgg 60
Query: 73 ttaacctcttttccagtatc 92
| ||||||||| |||||||
Sbjct: 61 ctcacctctttttcagtatc 80
>RF00641;mir-154;AAWR02020065.1/17831-17910 9796:Equus caballus
(horse)
Length = 80
Score = 95.6 bits (48), Expect = 1e-19
Identities = 72/80 (90%)
Strand = Plus / Plus
Query: 13 ggtacctgaagagaggttttctgggtttctgtttctttaatgaagatgaaacacacctag 72
|||||||||||||||||||||| ||| |||||||||||| ||| | |||||| |||| |
Sbjct: 1 ggtacctgaagagaggttttctaggtctctgtttctttagtgagggtgaaacgaacctgg 60
Query: 73 ttaacctcttttccagtatc 92
||||||||||||||||||||
Sbjct: 61 ttaacctcttttccagtatc 80
>RF00641;mir-154;ABRN01448850.1/5111-5190 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 80
Score = 95.6 bits (48), Expect = 1e-19
Identities = 72/80 (90%)
Strand = Plus / Plus
Query: 13 ggtacctgaagagaggttttctgggtttctgtttctttaatgaagatgaaacacacctag 72
||||||||| || ||||||||| ||| ||||||||||| |||| |||||||||||||| |
Sbjct: 1 ggtacctgaggacaggttttctaggtctctgtttctttcatgaggatgaaacacacctgg 60
Query: 73 ttaacctcttttccagtatc 92
||||||| ||||||||||||
Sbjct: 61 ttaaccttttttccagtatc 80
>RF00641;mir-154;AAQQ01350201.1/367-446 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 80
Score = 87.7 bits (44), Expect = 2e-17
Identities = 71/80 (88%)
Strand = Plus / Plus
Query: 13 ggtacctgaagagaggttttctgggtttctgtttctttaatgaagatgaaacacacctag 72
||||||||||||||||||||||||| || ||||||| | |||| |||||||||| || |
Sbjct: 1 ggtacctgaagagaggttttctgggcttgtgtttctgtgatgaggatgaaacacccccgg 60
Query: 73 ttaacctcttttccagtatc 92
||||||||||| ||||||||
Sbjct: 61 ttaacctctttcccagtatc 80
>RF00641;mir-154;AAHY01103470.1/69341-69262 10090:Mus musculus
(house mouse)
Length = 80
Score = 87.7 bits (44), Expect = 2e-17
Identities = 71/80 (88%)
Strand = Plus / Plus
Query: 13 ggtacctgaagagaggttttctgggtttctgtttctttaatgaagatgaaacacacctag 72
|||||| ||||||||||||||||||| ||||||||||| |||| |||||||||||| ||
Sbjct: 1 ggtaccggaagagaggttttctgggtctctgtttctttgatgagaatgaaacacacccag 60
Query: 73 ttaacctcttttccagtatc 92
|||||| |||| |||||||
Sbjct: 61 ctaacctttttttcagtatc 80
>RF00641;mir-154;AANN01422717.1/1753-1834 9365:Erinaceus europaeus
(western European hedgehog)
Length = 82
Score = 77.8 bits (39), Expect = 2e-14
Identities = 66/74 (89%), Gaps = 2/74 (2%)
Strand = Plus / Plus
Query: 17 cctgaagagaggttttctgggtttctgtttcttt--aatgaagatgaaacacacctagtt 74
||||||||||||||||||||| |||||||||||| | || | ||||||||||||| | |
Sbjct: 5 cctgaagagaggttttctgggcttctgtttcttttaagtgcacatgaaacacacctggct 64
Query: 75 aacctcttttccag 88
||||||||||||||
Sbjct: 65 aacctcttttccag 78
>RF00641;mir-154;ABRP01151523.1/5151-5228 132908:Pteropus vampyrus
(large flying fox)
Length = 78
Score = 65.9 bits (33), Expect = 9e-11
Identities = 69/80 (86%), Gaps = 2/80 (2%)
Strand = Plus / Plus
Query: 13 ggtacctgaagagaggttttctgggtttctgtttctttaatgaagatgaaacacacctag 72
|||||||| || |||||||||| ||| | |||||||||| || || ||||||||||| |
Sbjct: 1 ggtacctggagggaggttttctaggtgt--gtttctttaacgaggacgaaacacacctgg 58
Query: 73 ttaacctcttttccagtatc 92
|||||| |||||||||||||
Sbjct: 59 ttaaccccttttccagtatc 78
>RF00641;mir-154;AAQQ01350201.1/653-739 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 87
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 16 acctgaagagaggttttctgggtttctgtttcttt 50
||||| |||||||| ||||||||||||||||||||
Sbjct: 4 acctggagagaggtcttctgggtttctgtttcttt 38
