miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00765;mir-337;AAGU02593771.1/135-230 9785:Loxodonta africana
          (African savanna elephant)
          Length = 96

 Score =  117 bits (59), Expect = 3e-26
 Identities = 84/91 (92%), Gaps = 1/91 (1%)
 Strand = Plus / Plus

                                                                      
Query: 2  tagtcagtaggtggggggtgagaacggcttcatacaggagctgatgcgcagttacccagc 61
          |||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||
Sbjct: 5  tagtcagtaggtggggggtgagaacggcttcatacaggagttgatgcacagttatccagc 64

                                         
Query: 62 tcctatgagatgcctttcctca-ccccttca 91
          ||||||  |||||||||| ||| ||||||||
Sbjct: 65 tcctatatgatgcctttcttcatccccttca 95




>RF00765;mir-337;AAGV021061352.1/555-650 9361:Dasypus novemcinctus
          (nine-banded armadillo)
          Length = 96

 Score = 83.8 bits (42), Expect = 4e-16
 Identities = 66/74 (89%)
 Strand = Plus / Plus

                                                                      
Query: 6  cagtaggtggggggtgagaacggcttcatacaggagctgatgcgcagttacccagctcct 65
          |||||||||||||||| ||||||||||||||||||| || ||  |||||| |||||||||
Sbjct: 9  cagtaggtggggggtgggaacggcttcatacaggagttggtggacagttatccagctcct 68

                        
Query: 66 atgagatgcctttc 79
          ||  ||||||||||
Sbjct: 69 atatgatgcctttc 82




>RF00765;mir-337;AAPY01359946.1/778-872 37347:Tupaia belangeri
          (northern tree shrew)
          Length = 95

 Score = 75.8 bits (38), Expect = 9e-14
 Identities = 65/74 (87%)
 Strand = Plus / Plus

                                                                      
Query: 13 tggggggtgagaacggcttcatacaggagctgatgcgcagttacccagctcctatgagat 72
          ||||||||  ||||||||||||||||||| || ||||||||||||| ||||||||  || 
Sbjct: 15 tggggggtaggaacggcttcatacaggagttggtgcgcagttacccggctcctatatgac 74

                        
Query: 73 gcctttcctcaccc 86
          ||||||| ||||||
Sbjct: 75 gcctttcttcaccc 88




>RF00765;mir-337;ABRP01372708.1/596-690 132908:Pteropus vampyrus
          (large flying fox)
          Length = 95

 Score = 73.8 bits (37), Expect = 3e-13
 Identities = 71/81 (87%), Gaps = 1/81 (1%)
 Strand = Plus / Plus

                                                                      
Query: 7  agtaggtggggggtgagaacggcttcatacaggagctgatgcgcagttacccagctccta 66
          |||||| |||||||||||||||| |||| |||||| |||||| |||||||||||| ||||
Sbjct: 10 agtaggaggggggtgagaacggcctcatccaggagttgatgc-cagttacccagcgccta 68

                               
Query: 67 tgagatgcctttcctcacccc 87
             |||||||||| |||||||
Sbjct: 69 gatgatgcctttcttcacccc 89




>RF00765;mir-337;AAGW01106121.1/1459-1555 9986:Oryctolagus
          cuniculus (rabbit)
          Length = 97

 Score = 58.0 bits (29), Expect = 2e-08
 Identities = 63/73 (86%), Gaps = 1/73 (1%)
 Strand = Plus / Plus

                                                                      
Query: 8  gtaggtggggggtgagaacggcttcatacaggagctga-tgcgcagttacccagctccta 66
          |||| |||||| || ||||||||||||||||||| ||| ||| |||| | ||||||||||
Sbjct: 11 gtagttgggggatgggaacggcttcatacaggagttgattgcacagtcatccagctccta 70

                       
Query: 67 tgagatgcctttc 79
          |  ||||||||||
Sbjct: 71 tatgatgcctttc 83