miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00765;mir-337;AAGU02593771.1/135-230 9785:Loxodonta africana
(African savanna elephant)
Length = 96
Score = 117 bits (59), Expect = 3e-26
Identities = 84/91 (92%), Gaps = 1/91 (1%)
Strand = Plus / Plus
Query: 2 tagtcagtaggtggggggtgagaacggcttcatacaggagctgatgcgcagttacccagc 61
|||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||
Sbjct: 5 tagtcagtaggtggggggtgagaacggcttcatacaggagttgatgcacagttatccagc 64
Query: 62 tcctatgagatgcctttcctca-ccccttca 91
|||||| |||||||||| ||| ||||||||
Sbjct: 65 tcctatatgatgcctttcttcatccccttca 95
>RF00765;mir-337;AAGV021061352.1/555-650 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 96
Score = 83.8 bits (42), Expect = 4e-16
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 6 cagtaggtggggggtgagaacggcttcatacaggagctgatgcgcagttacccagctcct 65
|||||||||||||||| ||||||||||||||||||| || || |||||| |||||||||
Sbjct: 9 cagtaggtggggggtgggaacggcttcatacaggagttggtggacagttatccagctcct 68
Query: 66 atgagatgcctttc 79
|| ||||||||||
Sbjct: 69 atatgatgcctttc 82
>RF00765;mir-337;AAPY01359946.1/778-872 37347:Tupaia belangeri
(northern tree shrew)
Length = 95
Score = 75.8 bits (38), Expect = 9e-14
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 13 tggggggtgagaacggcttcatacaggagctgatgcgcagttacccagctcctatgagat 72
|||||||| ||||||||||||||||||| || ||||||||||||| |||||||| ||
Sbjct: 15 tggggggtaggaacggcttcatacaggagttggtgcgcagttacccggctcctatatgac 74
Query: 73 gcctttcctcaccc 86
||||||| ||||||
Sbjct: 75 gcctttcttcaccc 88
>RF00765;mir-337;ABRP01372708.1/596-690 132908:Pteropus vampyrus
(large flying fox)
Length = 95
Score = 73.8 bits (37), Expect = 3e-13
Identities = 71/81 (87%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 7 agtaggtggggggtgagaacggcttcatacaggagctgatgcgcagttacccagctccta 66
|||||| |||||||||||||||| |||| |||||| |||||| |||||||||||| ||||
Sbjct: 10 agtaggaggggggtgagaacggcctcatccaggagttgatgc-cagttacccagcgccta 68
Query: 67 tgagatgcctttcctcacccc 87
|||||||||| |||||||
Sbjct: 69 gatgatgcctttcttcacccc 89
>RF00765;mir-337;AAGW01106121.1/1459-1555 9986:Oryctolagus
cuniculus (rabbit)
Length = 97
Score = 58.0 bits (29), Expect = 2e-08
Identities = 63/73 (86%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 8 gtaggtggggggtgagaacggcttcatacaggagctga-tgcgcagttacccagctccta 66
|||| |||||| || ||||||||||||||||||| ||| ||| |||| | ||||||||||
Sbjct: 11 gtagttgggggatgggaacggcttcatacaggagttgattgcacagtcatccagctccta 70
Query: 67 tgagatgcctttc 79
| ||||||||||
Sbjct: 71 tatgatgcctttc 83
