miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00686;mir-338;ABRO01103244.1/1456-1377 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 80
Score = 85.7 bits (43), Expect = 5e-17
Identities = 55/59 (93%)
Strand = Plus / Plus
Query: 1 caacaatatcctggtgctgagtgatgacacacgcaactccagcatcagtgattttgttg 59
||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||
Sbjct: 13 caacaatatcctggtgctgagtggtgactccggcaactccagcatcagtgattttgttg 71
>RF00686;mir-338;ABRQ01133047.1/132-55 9813:Procavia capensis
(cape rock hyrax)
Length = 78
Score = 77.8 bits (39), Expect = 1e-14
Identities = 56/59 (94%), Gaps = 2/59 (3%)
Strand = Plus / Plus
Query: 1 caacaatatcctggtgctgagtgatgacacacgcaactccagcatcagtgattttgttg 59
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 13 caacaatatcctgc-gctgagtgatgacac-cgcaactccagcatcagtgattttgttg 69
>RF00686;mir-338;AANN01126736.1/1031-1108 9365:Erinaceus europaeus
(western European hedgehog)
Length = 78
Score = 63.9 bits (32), Expect = 2e-10
Identities = 53/59 (89%), Gaps = 2/59 (3%)
Strand = Plus / Plus
Query: 1 caacaatatcctggtgctgagtgatgacacacgcaactccagcatcagtgattttgttg 59
|||||| |||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 13 caacaacatcctggtgctgagtgatgatcaac--aactccagcatcagtgattttgttg 69
>RF00686;mir-338;AAWZ01002449.1/77719-77800 28377:Anolis
carolinensis (green anole)
Length = 82
Score = 58.0 bits (29), Expect = 1e-08
Identities = 55/61 (90%), Gaps = 2/61 (3%)
Strand = Plus / Plus
Query: 1 caacaatatcctggtgctgagtga-tgacacacgca-actccagcatcagtgattttgtt 58
|||||||||||||||||||||||| || ||| | | |||||||||||||||||||||||
Sbjct: 13 caacaatatcctggtgctgagtgagtggcactcaaagactccagcatcagtgattttgtt 72
Query: 59 g 59
|
Sbjct: 73 g 73
>RF00686;mir-338;AL953913.5/23199-23121 10090:Mus musculus (house
mouse)
Length = 79
Score = 54.0 bits (27), Expect = 2e-07
Identities = 52/59 (88%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 1 caacaatatcctggtgctgagtgatgacacacgcaactccagcatcagtgattttgttg 59
||||||||||||||||||||||| |||| | ||||||||||||||||||||||||
Sbjct: 13 caacaatatcctggtgctgagtgggtgcaca-gtgactccagcatcagtgattttgttg 70
>RF00686;mir-338;AAFR03029132.1/115398-115317 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 82
Score = 50.1 bits (25), Expect = 3e-06
Identities = 54/61 (88%), Gaps = 2/61 (3%)
Strand = Plus / Plus
Query: 1 caacaatatcctggtgctgagtgat-gacacacgca-actccagcatcagtgattttgtt 58
||||||||||||| |||||||||| | |||| | | |||||||||||||||||||||||
Sbjct: 13 caacaatatcctgatgctgagtgagcggcacatggagactccagcatcagtgattttgtt 72
Query: 59 g 59
|
Sbjct: 73 g 73
>RF00686;mir-338;CT033796.7/14466-14548 7955:Danio rerio
(zebrafish)
Length = 83
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 35 aactccagcatcagtgattttgttg 59
|||||||||||||||||||||||||
Sbjct: 50 aactccagcatcagtgattttgttg 74
>RF00686;mir-338;CAAB01002765.1/7900-7981 31033:Takifugu rubripes
Length = 82
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 35 aactccagcatcagtgattttgttg 59
|||||||||||||||||||||||||
Sbjct: 49 aactccagcatcagtgattttgttg 73
>RF00686;mir-338;AANH01004322.1/123577-123496 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 82
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 35 aactccagcatcagtgattttgttg 59
|||||||||||||||||||||||||
Sbjct: 49 aactccagcatcagtgattttgttg 73
>RF00686;mir-338;BAAF04022903.1/15976-15895 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 35 aactccagcatcagtgattttgttg 59
|||||||||||||||||||||||||
Sbjct: 49 aactccagcatcagtgattttgttg 73
>RF00686;mir-338;BAAF04036435.1/2170-2253 8090:Oryzias latipes
(Japanese medaka)
Length = 84
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 35 aactccagcatcagtgattttgttg 59
|||||||||||||||||||||||||
Sbjct: 51 aactccagcatcagtgattttgttg 75
>RF00686;mir-338;BX323027.8/66170-66089 7955:Danio rerio
(zebrafish)
Length = 82
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 36 actccagcatcagtgattttgttg 59
||||||||||||||||||||||||
Sbjct: 50 actccagcatcagtgattttgttg 73
>RF00686;mir-338;BX547935.12/10590-10671 7955:Danio rerio
(zebrafish)
Length = 82
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 36 actccagcatcagtgattttgttg 59
||||||||||||||||||||||||
Sbjct: 50 actccagcatcagtgattttgttg 73
>RF00686;mir-338;CAAE01014705.1/537256-537337 99883:Tetraodon
nigroviridis
Length = 82
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 36 actccagcatcagtgattttgttg 59
||||||||||||||||||||||||
Sbjct: 50 actccagcatcagtgattttgttg 73
>RF00686;mir-338;AANH01012267.1/23040-22957 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 84
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 36 actccagcatcagtgattttgttg 59
||||||||||||||||||||||||
Sbjct: 52 actccagcatcagtgattttgttg 75
>RF00686;mir-338;BAAF04103498.1/7620-7539 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 36 actccagcatcagtgattttgttg 59
||||||||||||||||||||||||
Sbjct: 50 actccagcatcagtgattttgttg 73
>RF00686;mir-338;ABQF01038321.1/45632-45552 59729:Taeniopygia
guttata
Length = 81
Score = 46.1 bits (23), Expect = 4e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 37 ctccagcatcagtgattttgttg 59
|||||||||||||||||||||||
Sbjct: 50 ctccagcatcagtgattttgttg 72
>RF00686;mir-338;AAVX01571211.1/489-569 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 46.1 bits (23), Expect = 4e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 37 ctccagcatcagtgattttgttg 59
|||||||||||||||||||||||
Sbjct: 50 ctccagcatcagtgattttgttg 72
>RF00686;mir-338;AAVX01041385.1/4416-4496 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 46.1 bits (23), Expect = 4e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 37 ctccagcatcagtgattttgttg 59
|||||||||||||||||||||||
Sbjct: 50 ctccagcatcagtgattttgttg 72
>RF00686;mir-338;CAAB01004517.1/3420-3502 31033:Takifugu rubripes
Length = 83
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 34 caactccagcatcagtgattttgttg 59
|||||||||||| |||||||||||||
Sbjct: 49 caactccagcattagtgattttgttg 74
