miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00760;mir-342;AANG01132780.1/2716-2814 9685:Felis catus
(domestic cat)
Length = 99
Score = 172 bits (87), Expect = 5e-43
Identities = 93/95 (97%)
Strand = Plus / Plus
Query: 5 ctgggctcaaggtgaggggtgctatctgtgattgagggacatggcaaatagaattgtctc 64
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ctgggcgcgaggtgaggggtgctatctgtgattgagggacatggcaaatagaattgtctc 64
Query: 65 acacagaaatcgcacccgtcaccttggcccgccta 99
|||||||||||||||||||||||||||||||||||
Sbjct: 65 acacagaaatcgcacccgtcaccttggcccgccta 99
>RF00760;mir-342;ABRQ01082244.1/3048-3146 9813:Procavia capensis
(cape rock hyrax)
Length = 99
Score = 153 bits (77), Expect = 5e-37
Identities = 89/93 (95%)
Strand = Plus / Plus
Query: 7 gggctcaaggtgaggggtgctatctgtgattgagggacatggcaaatagaattgtctcac 66
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 7 gggctcaaggtgaggggtgctatctgtgattgagggacatggtacatagaattgtctcac 66
Query: 67 acagaaatcgcacccgtcaccttggcccgccta 99
|||||||||||||||||| |||||||| |||||
Sbjct: 67 acagaaatcgcacccgtctccttggcctgccta 99
>RF00760;mir-342;ABRO01161250.1/591-689 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 99
Score = 151 bits (76), Expect = 2e-36
Identities = 85/88 (96%)
Strand = Plus / Plus
Query: 6 tgggctcaaggtgaggggtgctatctgtgattgagggacatggcaaatagaattgtctca 65
||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 6 tgggctcaaggtgaggggtgctatctgtgattgagggacatggttaatggaattgtctca 65
Query: 66 cacagaaatcgcacccgtcaccttggcc 93
||||||||||||||||||||||||||||
Sbjct: 66 cacagaaatcgcacccgtcaccttggcc 93
>RF00760;mir-342;AALT01532195.1/130-32 42254:Sorex araneus
(European shrew)
Length = 99
Score = 137 bits (69), Expect = 3e-32
Identities = 84/89 (94%)
Strand = Plus / Plus
Query: 3 acctgggctcaaggtgaggggtgctatctgtgattgagggacatggcaaatagaattgtc 62
|||||||||||||||||||||||| |||||||| ||||||||||||| || ||||||||
Sbjct: 3 acctgggctcaaggtgaggggtgccatctgtgactgagggacatggccaaaggaattgtc 62
Query: 63 tcacacagaaatcgcacccgtcaccttgg 91
|||||||||||||||||||||||||||||
Sbjct: 63 tcacacagaaatcgcacccgtcaccttgg 91
>RF00760;mir-342;AAKN02052316.1/108279-108377 10141:Cavia
porcellus (domestic guinea pig)
Length = 99
Score = 121 bits (61), Expect = 2e-27
Identities = 82/89 (92%)
Strand = Plus / Plus
Query: 5 ctgggctcaaggtgaggggtgctatctgtgattgagggacatggcaaatagaattgtctc 64
|||||| ||||||||||||||||||||||| | |||||||||| ||| ||||||||||
Sbjct: 5 ctgggcccaaggtgaggggtgctatctgtgctggagggacatgatcaatggaattgtctc 64
Query: 65 acacagaaatcgcacccgtcaccttggcc 93
|||||||||||||||||||||||||||||
Sbjct: 65 acacagaaatcgcacccgtcaccttggcc 93
>RF00760;mir-342;AAGW01329049.1/390-486 9986:Oryctolagus cuniculus
(rabbit)
Length = 97
Score = 105 bits (53), Expect = 1e-22
Identities = 75/81 (92%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 1 gaacctgggctcaaggtgaggggtgctatctgtgattgagggacatggcaaatagaattg 60
|||||||||||| |||||||||||||| |||||| ||||||||||||| ||| ||||||
Sbjct: 1 gaacctgggctcgaggtgaggggtgctctctgtgcgtgagggacatggc-aatcgaattg 59
Query: 61 tctcacacagaaatcgcaccc 81
|||||||||||||||||||||
Sbjct: 60 tctcacacagaaatcgcaccc 80
>RF00760;mir-342;AAFC03050755.1/31465-31562 9913:Bos taurus
(cattle)
Length = 98
Score = 81.8 bits (41), Expect = 2e-15
Identities = 72/81 (88%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 18 gaggggtgctatctgtgattgagggacatggcaaatagaattgtctcacacagaaatcgc 77
||||||||||||||||| |||||| ||| ||||||| || |||||||||||||||||||
Sbjct: 18 gaggggtgctatctgtggttgagg-acacggcaaatgaaactgtctcacacagaaatcgc 76
Query: 78 acccgtcaccttggcccgcct 98
|||| || ||| |||||||||
Sbjct: 77 acccatctcctcggcccgcct 97
>RF00760;mir-342;AAYZ01348637.1/771-867 9978:Ochotona princeps
(American pika)
Length = 97
Score = 63.9 bits (32), Expect = 4e-10
Identities = 57/64 (89%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 18 gaggggtgctatctgtgattgagggacatggcaaatagaattgtctcacacagaaatcgc 77
|||||||||| |||||| ||||||||||||| ||| ||| ||||||||||||| |||||
Sbjct: 18 gaggggtgctctctgtgcctgagggacatggc-aatggaactgtctcacacagacatcgc 76
Query: 78 accc 81
||||
Sbjct: 77 accc 80
