miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01044;mir-345;AAYZ01540228.1/2113-2017 9978:Ochotona princeps
(American pika)
Length = 97
Score = 143 bits (72), Expect = 5e-34
Identities = 87/92 (94%)
Strand = Plus / Plus
Query: 5 aaccccaggtctgctgactcctagtccagtgctcgtgatggctagtgggccctgaactag 64
|||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||| |
Sbjct: 6 aaccccaggtctgctgactcctcgtccagtgctcgagatggctgctgggccctgaactgg 65
Query: 65 gggtctggaggcctgggtttgaatatcgccag 96
||||||||||||||||||||||||||||||||
Sbjct: 66 gggtctggaggcctgggtttgaatatcgccag 97
>RF01044;mir-345;AAGU02348671.1/3072-3167 9785:Loxodonta africana
(African savanna elephant)
Length = 96
Score = 137 bits (69), Expect = 3e-32
Identities = 84/89 (94%)
Strand = Plus / Plus
Query: 8 cccaggtctgctgactcctagtccagtgctcgtgatggctagtgggccctgaactagggg 67
|||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||
Sbjct: 8 cccaggtctgctgactcctagtccagtgcttgtgatggccattgggccctgaactagggg 67
Query: 68 tctggaggcctgggtttgaatatcgccag 96
|||||||||||||||||| |||||||||
Sbjct: 68 cctggaggcctgggtttgattatcgccag 96
>RF01044;mir-345;AAPE01429219.1/603-698 59463:Myotis lucifugus
(little brown bat)
Length = 96
Score = 135 bits (68), Expect = 1e-31
Identities = 89/96 (92%)
Strand = Plus / Plus
Query: 1 acccaaccccaggtctgctgactcctagtccagtgctcgtgatggctagtgggccctgaa 60
|||||| ||||||||||| |||||||||||||||||| ||||||||| |||||||||| |
Sbjct: 1 acccaaacccaggtctgcggactcctagtccagtgcttgtgatggctggtgggccctgca 60
Query: 61 ctaggggtctggaggcctgggtttgaatatcgccag 96
||||||||||||||||||||| |||||||||||||
Sbjct: 61 ttaggggtctggaggcctgggtgtgaatatcgccag 96
>RF01044;mir-345;AC193024.5/98698-98794 9544:Macaca mulatta
(rhesus monkey)
Length = 97
Score = 119 bits (60), Expect = 7e-27
Identities = 84/92 (91%)
Strand = Plus / Plus
Query: 5 aaccccaggtctgctgactcctagtccagtgctcgtgatggctagtgggccctgaactag 64
||||| ||||| |||||||||||||| || ||||||| ||||| ||||||||||||| ||
Sbjct: 6 aaccctaggtcggctgactcctagtcaagggctcgtggtggctggtgggccctgaacgag 65
Query: 65 gggtctggaggcctgggtttgaatatcgccag 96
||||||||||||||||||||||||||| ||||
Sbjct: 66 gggtctggaggcctgggtttgaatatcaccag 97
>RF01044;mir-345;AAKN02051921.1/6097-6192 10141:Cavia porcellus
(domestic guinea pig)
Length = 96
Score = 115 bits (58), Expect = 1e-25
Identities = 85/94 (90%)
Strand = Plus / Plus
Query: 1 acccaaccccaggtctgctgactcctagtccagtgctcgtgatggctagtgggccctgaa 60
||||||||||||| ||||||||||| ||||||||||||||||| | ||||||||||
Sbjct: 1 acccaaccccagggctgctgactcccagtccagtgctcgtgatcccagccgggccctgaa 60
Query: 61 ctaggggtctggaggcctgggtttgaatatcgcc 94
|||||||||||||||||||||||||||| |||||
Sbjct: 61 ctaggggtctggaggcctgggtttgaatgtcgcc 94
>RF01044;mir-345;AC152061.6/175970-176065 10090:Mus musculus
(house mouse)
Length = 96
Score = 107 bits (54), Expect = 3e-23
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 9 ccaggtctgctgactcctagtccagtgctcgtgatggctagtgggccctgaactaggggt 68
||||| |||||||| |||||||||||||| ||| |||||| |||||||||||||||||||
Sbjct: 9 ccaggcctgctgacccctagtccagtgcttgtggtggctactgggccctgaactaggggt 68
Query: 69 ctggaggcctgggtttga 86
|||||| |||||||||||
Sbjct: 69 ctggagacctgggtttga 86
>RF01044;mir-345;ABRO01389073.1/865-964 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 100
Score = 107 bits (54), Expect = 3e-23
Identities = 81/89 (91%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 1 acccaaccccaggtctgctgactcctagtccagtgctcgtg--atggctagtgggccctg 58
|||||| |||||| ||||||||||||||||||||||||||| |||||| | ||||||||
Sbjct: 1 acccaaacccagggctgctgactcctagtccagtgctcgtgctatggctggggggccctg 60
Query: 59 aactaggggtctggaggcctgggtttgaa 87
| |||||||||||||||||||| ||||||
Sbjct: 61 agctaggggtctggaggcctggctttgaa 89
>RF01044;mir-345;AAIY01055903.1/172-268 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 97
Score = 105 bits (53), Expect = 1e-22
Identities = 77/85 (90%)
Strand = Plus / Plus
Query: 8 cccaggtctgctgactcctagtccagtgctcgtgatggctagtgggccctgaactagggg 67
|||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 8 cccaggcctgctgactcctagtccagtgctcgtgatgggcatagggccctgaactagggg 67
Query: 68 tctggaggcctgggtttgaatatcg 92
|||||||| ||| | ||||||||||
Sbjct: 68 tctggaggtctgcgcttgaatatcg 92
>RF01044;mir-345;ABRQ01086688.1/67-160 9813:Procavia capensis
(cape rock hyrax)
Length = 94
Score = 97.6 bits (49), Expect = 2e-20
Identities = 81/89 (91%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 1 acccaaccccaggtctgctgactcctagtccagtgctcgtgatggctagtgggccctgaa 60
|||||| | |||||| |||||||||||||||||||||||||||||| | |||| ||||||
Sbjct: 1 acccaaactcaggtcagctgactcctagtccagtgctcgtgatggccattggg-cctgaa 59
Query: 61 ctaggggtctggaggcctgggtttgaata 89
||||||||||||||| || ||||||||||
Sbjct: 60 ctaggggtctggagg-ctaggtttgaata 87
>RF01044;mir-345;AALT01091699.1/386-481 42254:Sorex araneus
(European shrew)
Length = 96
Score = 91.7 bits (46), Expect = 2e-18
Identities = 76/86 (88%)
Strand = Plus / Plus
Query: 1 acccaaccccaggtctgctgactcctagtccagtgctcgtgatggctagtgggccctgaa 60
|||||| |||||| | |||||||| ||||||||||||||||| |||| |||||||||||
Sbjct: 1 acccaaacccaggccggctgactcttagtccagtgctcgtgaaggctgctgggccctgaa 60
Query: 61 ctaggggtctggaggcctgggtttga 86
|| ||||||||||||||||| ||||
Sbjct: 61 ctgagggtctggaggcctgggcttga 86
