miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00758;mir-346;ABRT010507805.1/103-1 9478:Tarsius syrichta
(Philippine tarsier)
Length = 103
Score = 153 bits (77), Expect = 5e-37
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 5 tctgtgttgggcgtctgtctgcccgcatgcctgcctctctgttgctctgaaggaggcagg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tctgtgttgggcgtctgtctgcccgcatgcctgcctctctgttgctctgaaggaggcagg 60
Query: 65 ggctgggcctgcagctg 81
|||||||||||||||||
Sbjct: 61 ggctgggcctgcagctg 77
>RF00758;mir-346;AABR04015636.1/21624-21527 10116:Rattus
norvegicus (Norway rat)
Length = 98
Score = 145 bits (73), Expect = 1e-34
Identities = 85/89 (95%)
Strand = Plus / Plus
Query: 5 tctgtgttgggcgtctgtctgcccgcatgcctgcctctctgttgctctgaaggaggcagg 64
|||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 1 tctgtgttgggcatctgtctgcctgagtgcctgcctctctgttgctctgaaggaggcagg 60
Query: 65 ggctgggcctgcagctgcctgggcagagc 93
|||||||||||||||||||||||||||||
Sbjct: 61 ggctgggcctgcagctgcctgggcagagc 89
>RF00758;mir-346;AAIY01391882.1/1153-1058 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 96
Score = 101 bits (51), Expect = 2e-21
Identities = 83/91 (91%), Gaps = 2/91 (2%)
Strand = Plus / Plus
Query: 5 tctgtgttgggcgtctgtctgcccgcatgcctgcctctctgttgctctgaaggaggcagg 64
||||||||||||| |||||||||| | |||||||||||||| | |||||||||||||||
Sbjct: 1 tctgtgttgggcgcctgtctgcccacctgcctgcctctctg-tcatctgaaggaggcagg 59
Query: 65 ggctgggcctgcagctgcctgggcagagcgg 95
||| ||| |||||||||||||||||||||||
Sbjct: 60 ggccggg-ctgcagctgcctgggcagagcgg 89
>RF00758;mir-346;ABRQ01820904.1/910-1009 9813:Procavia capensis
(cape rock hyrax)
Length = 100
Score = 75.8 bits (38), Expect = 9e-14
Identities = 58/62 (93%), Gaps = 2/62 (3%)
Strand = Plus / Plus
Query: 32 tgcctgcctctctgttgctctgaaggaggcaggggctgggcctgcagctgcctgggcaga 91
|||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 32 tgcctgtctctctgtc-ctctgaaggaggcaggggctggg-ctgcagctgcctgggcaga 89
Query: 92 gc 93
||
Sbjct: 90 gc 91
