miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00806;mir-350;AAWR02039510.1/16310-16408 9796:Equus caballus
(horse)
Length = 99
Score = 190 bits (96), Expect = 2e-48
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 1 aaaccctttgctcctataagagtaaagtgcacgcgctttgggacagtgaggaagatgatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaaccctttgctcctataagagtaaagtgcacgcgctttgggacagtgaggaagatgatg 60
Query: 61 ttcacaaagcccatacacttttactctttaggagag 96
||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttcacaaagcccatacacttttactctttaggagag 96
>RF00806;mir-350;AAGU02328088.1/341-243 9785:Loxodonta africana
(African savanna elephant)
Length = 99
Score = 141 bits (71), Expect = 2e-33
Identities = 86/91 (94%)
Strand = Plus / Plus
Query: 6 ctttgctcctataagagtaaagtgcacgcgctttgggacagtgaggaagatgatgttcac 65
||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 6 ctttgctcctacaagagtaaagtgcacgcgctttgggacagtgaggaaaatattgttcac 65
Query: 66 aaagcccatacacttttactctttaggagag 96
||||||||||||||||||| |||||||||||
Sbjct: 66 aaagcccatacacttttaccctttaggagag 96
>RF00806;mir-350;AAFC03070376.1/47198-47100 9913:Bos taurus
(cattle)
Length = 99
Score = 77.8 bits (39), Expect = 2e-14
Identities = 78/91 (85%)
Strand = Plus / Plus
Query: 6 ctttgctcctataagagtaaagtgcacgcgctttgggacagtgaggaagatgatgttcac 65
|||||||||| |||||| || |||||| ||||||||||||||| || || |||| |||
Sbjct: 6 ctttgctcctgcaagagtgaaatgcacgtgctttgggacagtgaagacaataatgtacac 65
Query: 66 aaagcccatacacttttactctttaggagag 96
|||| |||||||||||||| | |||||||||
Sbjct: 66 aaagtccatacacttttacccattaggagag 96
>RF00806;mir-350;ABRQ01049184.1/11230-11132 9813:Procavia capensis
(cape rock hyrax)
Length = 99
Score = 71.9 bits (36), Expect = 1e-12
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 18 aagagtaaagtgcacgcgctttgggacagtgaggaagatgatgttcacaaagcccataca 77
|||||| |||||||||||||||||||| |||||||| | || ||||||||||||||||
Sbjct: 18 aagagtgaagtgcacgcgctttgggactgtgaggaaaacattgctcacaaagcccataca 77
Query: 78 cttt 81
||||
Sbjct: 78 cttt 81
>RF00806;mir-350;ABRR01009120.1/3250-3152 30538:Lama pacos
(alpaca)
Length = 99
Score = 56.0 bits (28), Expect = 8e-08
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 26 agtgcacgcgctttgggacagtgaggaagatgatgttcacaaagcccatacacttttact 85
|||||| |||||||| || ||||| ||| || ||||| ||||||||||||| |||||||
Sbjct: 26 agtgcatgcgctttgagagagtgaagaaaataatgtttacaaagcccatacgcttttacc 85
Query: 86 ctttagga 93
||| ||||
Sbjct: 86 cttcagga 93
