miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01903;mir-500;AAGW01126437.1/6267-6356 9986:Oryctolagus
cuniculus (rabbit)
Length = 90
Score = 99.6 bits (50), Expect = 4e-21
Identities = 62/66 (93%)
Strand = Plus / Plus
Query: 1 tctcgaatccttggaacctaggtgtgagtgccatttcagtgcaacacacctattcaagga 60
|||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 14 tctcaaatccttggcacctaggtgtgagtgctgtttcagtgcaacacacctattcaagga 73
Query: 61 ttcaaa 66
||||||
Sbjct: 74 ttcaaa 79
>RF01903;mir-500;ABRR01444762.1/1337-1426 30538:Lama pacos
(alpaca)
Length = 90
Score = 91.7 bits (46), Expect = 1e-18
Identities = 61/66 (92%)
Strand = Plus / Plus
Query: 1 tctcgaatccttggaacctaggtgtgagtgccatttcagtgcaacacacctattcaagga 60
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 14 tctcgaatccttggaacctaggtgtgagtgccgttctgatgcaacacacctattcaagga 73
Query: 61 ttcaaa 66
||||||
Sbjct: 74 ttcaaa 79
>RF01903;mir-500;ABRQ01341134.1/4896-4985 9813:Procavia capensis
(cape rock hyrax)
Length = 90
Score = 85.7 bits (43), Expect = 6e-17
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 1 tctcgaatccttggaacctaggtgtgagtgccatttcagtgcaacacacctattcaagga 60
|||| |||||||||||||||||||||||||| | ||||||||||||||||| || |||||
Sbjct: 14 tctctaatccttggaacctaggtgtgagtgctacttcagtgcaacacacctgttgaagga 73
Query: 61 ttc 63
|||
Sbjct: 74 ttc 76
>RF01903;mir-500;AANN01738471.1/11-100 9365:Erinaceus europaeus
(western European hedgehog)
Length = 90
Score = 79.8 bits (40), Expect = 4e-15
Identities = 60/64 (93%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 1 tctcgaatccttggaacctaggtgtgagtgccatttcagtgcaacaca-cctattcaagg 59
||||||||||| ||||||||||||||||||| ||| |||||||||||| |||||||||||
Sbjct: 14 tctcgaatcct-ggaacctaggtgtgagtgctattccagtgcaacacaccctattcaagg 72
Query: 60 attc 63
||||
Sbjct: 73 attc 76
