miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00659;mir-365;AAIY01424277.1/585-676 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 92
Score = 123 bits (62), Expect = 3e-28
Identities = 65/66 (98%)
Strand = Plus / Plus
Query: 1 aatgagggactttcaggggcagctgtgttttctgactcagtcataatgcccctaaaaatc 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 12 aatgagggactttcaggggcagctgtgttttgtgactcagtcataatgcccctaaaaatc 71
Query: 61 cttatt 66
||||||
Sbjct: 72 cttatt 77
>RF00659;mir-365;AANG01161851.1/1480-1570 9685:Felis catus
(domestic cat)
Length = 91
Score = 121 bits (61), Expect = 1e-27
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 1 aatgagggactttcaggggcagctgtgttttctgactcagtcataatgcccctaaaaatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 aatgagggactttcaggggcagctgtgttttctgactcagtcataatgcccctaaaaatc 71
Query: 61 c 61
|
Sbjct: 72 c 72
>RF00659;mir-365;AAPE01619298.1/1229-1137 59463:Myotis lucifugus
(little brown bat)
Length = 93
Score = 109 bits (55), Expect = 4e-24
Identities = 62/63 (98%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 5 agggactttcaggggcagctgtgttttctgactc-agtcataatgcccctaaaaatcctt 63
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 16 agggactttcaggggcagctgtgttttctgactcaagtcataatgcccctaaaaatcctt 75
Query: 64 att 66
|||
Sbjct: 76 att 78
>RF00659;mir-365;BAAE01286148.1/272-364 8090:Oryzias latipes
(Japanese medaka)
Length = 93
Score = 85.7 bits (43), Expect = 6e-17
Identities = 62/67 (92%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 1 aatgagggactttcaggggcagctgtgttttctga-ctcagtcataatgcccctaaaaat 59
||||||||||||| ||||||||||||||||| | | | ||||||||||||||||||||||
Sbjct: 12 aatgagggacttttaggggcagctgtgttttattaacccagtcataatgcccctaaaaat 71
Query: 60 ccttatt 66
|||||||
Sbjct: 72 ccttatt 78
>RF00659;mir-365;AADN02023913.1/98870-98778 9031:Gallus gallus
(chicken)
Length = 93
Score = 54.0 bits (27), Expect = 2e-07
Identities = 58/67 (86%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 1 aatgagggactttcaggggcagctgtgttttc-tgactcagtcataatgcccctaaaaat 59
||||||||||||| ||||||| ||||||| | | || | |||||||||||||||||||
Sbjct: 12 aatgagggacttttgggggcagatgtgtttccattacactatcataatgcccctaaaaat 71
Query: 60 ccttatt 66
|||||||
Sbjct: 72 ccttatt 78
>RF00659;mir-365;CU138533.13/80864-80956 7955:Danio rerio
(zebrafish)
Length = 93
Score = 52.0 bits (26), Expect = 8e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 41 tcataatgcccctaaaaatccttatt 66
||||||||||||||||||||||||||
Sbjct: 53 tcataatgcccctaaaaatccttatt 78
>RF00659;mir-365;AAVX01470594.1/166-258 7868:Callorhinchus milii
(ghost shark)
Length = 93
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 39 agtcataatgcccctaaaaatccttatt 66
||||||||||||||||||||||| ||||
Sbjct: 51 agtcataatgcccctaaaaatccctatt 78
