miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00735;mir-367;AAIY01685397.1/7052-6985 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 68
Score = 93.7 bits (47), Expect = 3e-19
Identities = 59/63 (93%)
Strand = Plus / Plus
Query: 6 actgttgctaatatgcaactctgttcaatacaaactggaattgcactttagcaatggtga 65
||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 6 actgttgctaacatgcaactctgttcaatttaaattggaattgcactttagcaatggtga 65
Query: 66 cgg 68
|||
Sbjct: 66 cgg 68
>RF00735;mir-367;ABVD01917286.1/669-603 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 67
Score = 91.7 bits (46), Expect = 1e-18
Identities = 52/54 (96%)
Strand = Plus / Plus
Query: 1 ccatcactgttgctaatatgcaactctgttcaatacaaactggaattgcacttt 54
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 ccattactgttgctaatatgcaactctgttcaatataaactggaattgcacttt 54
>RF00735;mir-367;AANN01821362.1/2035-1968 9365:Erinaceus europaeus
(western European hedgehog)
Length = 68
Score = 87.7 bits (44), Expect = 2e-17
Identities = 56/60 (93%)
Strand = Plus / Plus
Query: 6 actgttgctaatatgcaactctgttcaatacaaactggaattgcactttagcaatggtga 65
|||||||||||| |||||||||||||| ||| || |||||||||||||||||||||||||
Sbjct: 6 actgttgctaatgtgcaactctgttcagtaccaattggaattgcactttagcaatggtga 65
>RF00735;mir-367;ABRN01119546.1/243-176 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 68
Score = 81.8 bits (41), Expect = 1e-15
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 1 ccatcactgttgctaatatgcaactctgttcaatacaaactggaattgcactttagcaat 60
|||| |||||||| ||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 1 ccattactgttgccaatatgcaactctgttcaatacaaattggaattgtgttttagcaat 60
Query: 61 ggtga 65
|||||
Sbjct: 61 ggtga 65
>RF00735;mir-367;AAGW01417911.1/1409-1476 9986:Oryctolagus
cuniculus (rabbit)
Length = 68
Score = 81.8 bits (41), Expect = 1e-15
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 1 ccatcactgttgctaatatgcaactctgttcaatacaaactggaattgcactttagcaat 60
|||| ||||||||||||||||||||||||| |||| | | ||||||||||| ||||||||
Sbjct: 1 ccattactgttgctaatatgcaactctgttgaatatatattggaattgcacattagcaat 60
Query: 61 ggtga 65
|||||
Sbjct: 61 ggtga 65
>RF00735;mir-367;AADN02009328.1/24642-24709 9031:Gallus gallus
(chicken)
Length = 68
Score = 79.8 bits (40), Expect = 4e-15
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 6 actgttgctaatatgcaactctgttcaatacaaactggaattgcactttagcaatggtga 65
||||||||||| ||||||||||||| ||| ||| |||||||||||||||||||||||||
Sbjct: 6 actgttgctaacatgcaactctgttgtataaaaattggaattgcactttagcaatggtga 65
>RF00735;mir-367;ABRP01199153.1/3576-3511 132908:Pteropus vampyrus
(large flying fox)
Length = 66
Score = 77.8 bits (39), Expect = 2e-14
Identities = 59/63 (93%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 6 actgttgctaatatgcaactctgttcaatacaaactggaattgcactttagcaatggtga 65
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 6 actgttgctaatatgcaactctgttcac-acag-ctggaattgcactttagcaatggtga 63
Query: 66 cgg 68
|||
Sbjct: 64 cgg 66
>RF00735;mir-367;AAHX01020222.1/16082-16015 10116:Rattus
norvegicus (Norway rat)
Length = 68
Score = 75.8 bits (38), Expect = 6e-14
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 4 tcactgttgctaatatgcaactctgttcaatacaaactggaattgcactttagcaatggt 63
|||||| ||||||| |||||||||||| | ||| |||||||||||||||||||||||||
Sbjct: 4 tcactgctgctaatctgcaactctgttgagcacacactggaattgcactttagcaatggt 63
Query: 64 ga 65
||
Sbjct: 64 ga 65
>RF00735;mir-367;AAWZ01008661.1/78859-78792 28377:Anolis
carolinensis (green anole)
Length = 68
Score = 71.9 bits (36), Expect = 9e-13
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 6 actgttgctaatatgcaactctgttcaatacaaactggaattgcactttagcaatggtga 65
|||||||||||| |||||||||||| || || ||||||||||||||||||||||||||
Sbjct: 6 actgttgctaatgtgcaactctgttatgtataatctggaattgcactttagcaatggtga 65
>RF00735;mir-367;AAPY01684075.1/7711-7646 37347:Tupaia belangeri
(northern tree shrew)
Length = 66
Score = 58.0 bits (29), Expect = 1e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 40 ctggaattgcactttagcaatggtgacgg 68
|||||||||||||||||||||||||||||
Sbjct: 38 ctggaattgcactttagcaatggtgacgg 66
>RF00735;mir-367;AAKN02038884.1/104135-104068 10141:Cavia
porcellus (domestic guinea pig)
Length = 68
Score = 58.0 bits (29), Expect = 1e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 40 ctggaattgcactttagcaatggtgacgg 68
|||||||||||||||||||||||||||||
Sbjct: 40 ctggaattgcactttagcaatggtgacgg 68
