miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;AAGU02626700.1/453-531 9785:Loxodonta africana
(African savanna elephant)
Length = 79
Score = 101 bits (51), Expect = 1e-21
Identities = 60/63 (95%)
Strand = Plus / Plus
Query: 2 tgaagggagatcgaccgtgtcatattcgctttattgacttcgaataatacatggttgatc 61
|||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||
Sbjct: 7 tgaagggagatcgaccgtgttatattcgctttcttcacttcgaataatacatggttgatc 66
Query: 62 ttt 64
|||
Sbjct: 67 ttt 69
>RF00641;mir-154;ABRO01197049.1/10447-10525 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 79
Score = 95.6 bits (48), Expect = 7e-20
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 1 ttgaagggagatcgaccgtgtcatattcgctttattgacttcgaataatacatggttgat 60
|||||||||||||||| |||| |||||||| || |||||||||||||||||||||||||
Sbjct: 6 ttgaagggagatcgactgtgttatattcgcagtactgacttcgaataatacatggttgat 65
Query: 61 cttttctc 68
||||||||
Sbjct: 66 cttttctc 73
>RF00641;mir-154;ABRQ01054379.1/186-263 9813:Procavia capensis
(cape rock hyrax)
Length = 78
Score = 93.7 bits (47), Expect = 3e-19
Identities = 63/67 (94%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 2 tgaagggagatcgaccgtgtcatattcgctttattgacttcgaataatacatggttgatc 61
||||| |||||||||||||| ||||||||||| |||||| ||||||||||||||||||||
Sbjct: 7 tgaagagagatcgaccgtgttatattcgctttcttgact-cgaataatacatggttgatc 65
Query: 62 ttttctc 68
|||||||
Sbjct: 66 ttttctc 72
>RF00641;mir-154;AAGW01274484.1/168-246 9986:Oryctolagus cuniculus
(rabbit)
Length = 79
Score = 65.9 bits (33), Expect = 6e-11
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 2 tgaagggagatcgaccgtgtcatattcgctttattgacttcgaataatacatggttgatc 61
|||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||
Sbjct: 7 tgaagggagatcgaccgtgttccattcgctccgctgacttcgaataatagatggttgatc 66
Query: 62 ttttctcgg 70
||| |||||
Sbjct: 67 tttcctcgg 75
