miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00665;mir-290;AAWR02030859.1/16284-16365 9796:Equus caballus
(horse)
Length = 82
Score = 119 bits (60), Expect = 4e-27
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 1 actcaaactgtgggggcactttctgtgctacgtagggaagtgccgccattttttgagtgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 actcaaactgtgggggcactttctgtgctacgtagggaagtgccgccattttttgagtgt 72
>RF00665;mir-290;ACBE01428472.1/1582-1663 9685:Felis catus
(domestic cat)
Length = 82
Score = 95.6 bits (48), Expect = 5e-20
Identities = 57/60 (95%)
Strand = Plus / Plus
Query: 1 actcaaactgtgggggcactttctgtgctacgtagggaagtgccgccattttttgagtgt 60
|||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||
Sbjct: 13 actcaaactgtgggggcactttctgttctaagtaggaaagtgccgccattttttgagtgt 72
>RF00665;mir-290;AC191152.6/69098-69179 9615:Canis lupus
familiaris (dog)
Length = 82
Score = 95.6 bits (48), Expect = 5e-20
Identities = 57/60 (95%)
Strand = Plus / Plus
Query: 1 actcaaactgtgggggcactttctgtgctacgtagggaagtgccgccattttttgagtgt 60
|||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||
Sbjct: 13 actcaaactgtgggggcactttctgttctaggtaggaaagtgccgccattttttgagtgt 72
>RF00665;mir-290;ABRN01338600.1/10040-9960 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 81
Score = 79.8 bits (40), Expect = 3e-15
Identities = 56/60 (93%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 1 actcaaactgtgggggcactttctgtgctacgtagggaagtgccgccattttttgagtgt 60
||||||||||||||||||||| |||| ||||| |||||||||||||||| ||||||||||
Sbjct: 13 actcaaactgtgggggcactt-ctgttctacgaagggaagtgccgccatcttttgagtgt 71
>RF00665;mir-290;AALT01169508.1/1570-1488 42254:Sorex araneus
(European shrew)
Length = 83
Score = 63.9 bits (32), Expect = 2e-10
Identities = 55/60 (91%), Gaps = 2/60 (3%)
Strand = Plus / Plus
Query: 1 actcaaactgtgggggcactttctgtgctac-gtagggaagtgccgccattttttgagtg 59
|||||||||||||||||||||||||| || | | ||| ||||||||||||||||||||||
Sbjct: 14 actcaaactgtgggggcactttctgt-ctcctggaggaaagtgccgccattttttgagtg 72
>RF00665;mir-290;AAFC03106078.1/3411-3491 9913:Bos taurus (cattle)
Length = 81
Score = 63.9 bits (32), Expect = 2e-10
Identities = 54/60 (90%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 1 actcaaactgtgggggcactttctgtgctacgtagggaagtgccgccattttttgagtgt 60
||||||||||||||||||||| | || |||| |||||||||||||||| ||||||||||
Sbjct: 13 actcaaactgtgggggcacttcc-gttttacgaagggaagtgccgccatgttttgagtgt 71
>RF00665;mir-290;AANN01201868.1/2038-1956 9365:Erinaceus europaeus
(western European hedgehog)
Length = 83
Score = 58.0 bits (29), Expect = 1e-08
Identities = 54/61 (88%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 1 actcaaactgtgggggcactttct-gtgctacgtagggaagtgccgccattttttgagtg 59
|||||||||||||||||||||||| ||| | | |||||||||||||||| ||||||||
Sbjct: 13 actcaaactgtgggggcactttctggtgttcaggagggaagtgccgccatgatttgagtg 72
Query: 60 t 60
|
Sbjct: 73 t 73
>RF00665;mir-290;AAQR01736199.1/983-1063 30611:Otolemur garnettii
(small-eared galago)
Length = 81
Score = 56.0 bits (28), Expect = 5e-08
Identities = 53/60 (88%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 1 actcaaactgtgggggcactttctgtgctacgtagggaagtgccgccattttttgagtgt 60
||||||||||||||||||||||||| |||| | | ||||||||||| |||||||||||
Sbjct: 13 actcaaactgtgggggcactttctggtctac-aacgaaagtgccgccactttttgagtgt 71
>RF00665;mir-290;ABDC01467998.1/1387-1307 30608:Microcebus murinus
(gray mouse lemur)
Length = 81
Score = 52.0 bits (26), Expect = 7e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 actcaaactgtgggggcactttctgt 26
||||||||||||||||||||||||||
Sbjct: 13 actcaaactgtgggggcactttctgt 38
>RF00665;mir-290;AAPE01483022.1/895-815 59463:Myotis lucifugus
(little brown bat)
Length = 81
Score = 50.1 bits (25), Expect = 3e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 actcaaactgtgggggcactttctgtgct 29
|||||||||| ||||||||||||||||||
Sbjct: 13 actcaaactgggggggcactttctgtgct 41
>RF00665;mir-290;CABD01090865.1/1100-1020 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 81
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 actcaaactgtgggggcactttctg 25
|||||||||||||||||||||||||
Sbjct: 13 actcaaactgtgggggcactttctg 37
>RF00665;mir-290;AANU01181644.1/1881-1964 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 actcaaactgtgggggcactttctg 25
|||||||||||||||||||||||||
Sbjct: 13 actcaaactgtgggggcactttctg 37
>RF00665;mir-290;ABRQ01217814.1/3466-3387 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 50.1 bits (25), Expect = 3e-06
Identities = 52/60 (86%), Gaps = 2/60 (3%)
Strand = Plus / Plus
Query: 1 actcaaactgtgggggcactttctgtgctacgtagggaagtgccgccattttttgagtgt 60
|||||||||||||||||||||||| | ||||| | |||||| |||| |||||||||||
Sbjct: 13 actcaaactgtgggggcactttctat--cacgtacgaaagtgctgccactttttgagtgt 70
>RF00665;mir-290;AAPY01553483.1/1697-1619 37347:Tupaia belangeri
(northern tree shrew)
Length = 79
Score = 46.1 bits (23), Expect = 4e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 38 aagtgccgccattttttgagtgt 60
|||||||||||||||||||||||
Sbjct: 48 aagtgccgccattttttgagtgt 70
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 actcaaactgtgggggcacttt 22
||||||||||||||||||||||
Sbjct: 13 actcaaactgtgggggcacttt 34
>RF00665;mir-290;AAQQ01729328.1/1050-1131 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 82
Score = 46.1 bits (23), Expect = 4e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 2 ctcaaactgtgggggcactttctgtgc 28
||||||||||||||||||||| |||||
Sbjct: 14 ctcaaactgtgggggcactttttgtgc 40
>RF00665;mir-290;ABRT010900982.1/881-962 9478:Tarsius syrichta
(Philippine tarsier)
Length = 82
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 actcaaactgtgggggcacttt 22
||||||||||||||||||||||
Sbjct: 13 actcaaactgtgggggcacttt 34
>RF00665;mir-290;ABRO01361721.1/480-394 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 87
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 actcaaactgtgggggcacttt 22
||||||||||||||||||||||
Sbjct: 13 actcaaactgtgggggcacttt 34
>RF00665;mir-290;AAIY01463435.1/1145-1228 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 84
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 actcaaactgtgggggcactttctgt 26
||||||||| ||||||||||||||||
Sbjct: 13 actcaaactttgggggcactttctgt 38
