miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;ABRQ01054372.1/1100-1179 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 115 bits (58), Expect = 7e-26
Identities = 64/66 (96%)
Strand = Plus / Plus
Query: 1 aaaaggtggatattccttctatgtttatgttgtttatggttaaacatagaggaaattcca 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 8 aaaaggtggatattccttctatgtttatgttatttatggttaaacatagaggaaattcca 67
Query: 61 cgtttt 66
| ||||
Sbjct: 68 catttt 73
>RF00641;mir-154;ABRP01151523.1/16147-16226 132908:Pteropus
vampyrus (large flying fox)
Length = 80
Score = 63.9 bits (32), Expect = 2e-10
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 2 aaaggtggatattccttctatgtttatgttgtttatggttaaacatagaggaaattccac 61
|||||||||| ||||||||||||||| |||||||||||| ||||||||||| |||||
Sbjct: 9 aaaggtggattttccttctatgtttacagggtttatggttaagcatagaggaaaatccac 68
>RF00641;mir-154;AANN01196583.1/1560-1639 9365:Erinaceus europaeus
(western European hedgehog)
Length = 80
Score = 60.0 bits (30), Expect = 3e-09
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 1 aaaaggtggatattccttctatgtttatgttgtttatggttaaacatagaggaaattcca 60
|||||||||||||| ||||||||||||| || |||||||||| |||||||| |||||
Sbjct: 8 aaaaggtggatatttcttctatgtttattggattcatggttaaacgtagaggaagttcca 67
Query: 61 cgtttt 66
| ||||
Sbjct: 68 cttttt 73
>RF00641;mir-154;AAEX02019639.1/145777-145856 9615:Canis lupus
familiaris (dog)
Length = 80
Score = 60.0 bits (30), Expect = 3e-09
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 5 ggtggatattccttctatgtttatgttgtttatggttaaacatagaggaaattccacgtt 64
||||||| ||||||||||||||| | ||||| ||||| ||||||||||| ||||||||
Sbjct: 12 ggtggatgttccttctatgtttacgggatttatagttaatcatagaggaaaatccacgtt 71
Query: 65 tt 66
||
Sbjct: 72 tt 73
>RF00641;mir-154;AAQR01332677.1/6513-6587 30611:Otolemur garnettii
(small-eared galago)
Length = 75
Score = 60.0 bits (30), Expect = 3e-09
Identities = 54/58 (93%), Gaps = 3/58 (5%)
Strand = Plus / Plus
Query: 1 aaaaggtggatattccttctatgtttatgttgtttatggttaaacatagaggaaattc 58
||||||||||||||||||||||| ||||| | ||||||||| ||||||||||||||||
Sbjct: 8 aaaaggtggatattccttctatg-ttatg-tatttatggtt-aacatagaggaaattc 62
>RF00641;mir-154;ABRT010163748.1/957-1036 9478:Tarsius syrichta
(Philippine tarsier)
Length = 80
Score = 60.0 bits (30), Expect = 3e-09
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 1 aaaaggtggatattccttctatgtttatgttgtttatggttaaacatagaggaaattcca 60
||||||||||||||||||||||||||| ||||| ||||| ||||||||||| ||||
Sbjct: 8 aaaaggtggatattccttctatgtttacagaatttatagttaatcatagaggaaaatcca 67
Query: 61 cgtttt 66
| ||||
Sbjct: 68 catttt 73
>RF00641;mir-154;AAGW01206553.1/1248-1327 9986:Oryctolagus
cuniculus (rabbit)
Length = 80
Score = 60.0 bits (30), Expect = 3e-09
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 1 aaaaggtggatattccttctatgtttatgttgtttatggttaaacatagaggaaattcca 60
||||||||||| ||||||||||||||| || || ||||||| ||||||||||| ||||
Sbjct: 8 aaaaggtggattttccttctatgtttacgtgattgctggttaatcatagaggaaaatcca 67
Query: 61 cgtttt 66
|||||
Sbjct: 68 tgtttt 73
>RF00641;mir-154;ABRQ01054372.1/730-809 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 60.0 bits (30), Expect = 3e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 aaaaggtggatattccttctatgtttatgt 30
||||||||||||||||||||||||||||||
Sbjct: 8 aaaaggtggatattccttctatgtttatgt 37
>RF00641;mir-154;AAFC03087120.1/1987-1908 9913:Bos taurus (cattle)
Length = 80
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 aaaaggtggatattccttctatgttta 27
|||||||||||||||||||||||||||
Sbjct: 8 aaaaggtggatattccttctatgttta 34
>RF00641;mir-154;ABDC01257673.1/7254-7333 30608:Microcebus murinus
(gray mouse lemur)
Length = 80
Score = 52.0 bits (26), Expect = 8e-07
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 1 aaaaggtggatattccttctatgtttatgttgtttatggttaaacatagaggaaattcca 60
||||||||||| ||||||||||||||| ||| ||||||| ||||||||||| ||||
Sbjct: 8 aaaaggtggatgttccttctatgtttacaggatttgtggttaatcatagaggaaaatcca 67
Query: 61 cgtttt 66
| ||||
Sbjct: 68 catttt 73
>RF00641;mir-154;AADB02234032.1/262-341 9606:Homo sapiens (human)
Length = 80
Score = 52.0 bits (26), Expect = 8e-07
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 13 ttccttctatgtttatgttgtttatggttaaacatagaggaaattccacgtttt 66
||||||||||| ||| || || |||||||| ||||||||||| ||||||||||
Sbjct: 20 ttccttctatggttacgtgtttgatggttaatcatagaggaaaatccacgtttt 73
>RF00641;mir-154;AAIY01443497.1/2027-2105 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 79
Score = 52.0 bits (26), Expect = 8e-07
Identities = 57/66 (86%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 1 aaaaggtggatattccttctatgtttatgttgtttatggttaaacatagaggaaattcca 60
||||||| ||| |||||| |||| ||| ||| || |||||||| ||||||||||| ||||
Sbjct: 8 aaaaggtagattttccttttatggttacgtt-ttgatggttaatcatagaggaaaatcca 66
Query: 61 cgtttt 66
||||||
Sbjct: 67 cgtttt 72
>RF00641;mir-154;AANU01197805.1/77711-77790 9544:Macaca mulatta
(rhesus monkey)
Length = 80
Score = 50.1 bits (25), Expect = 3e-06
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 1 aaaaggtggatattccttctatgtttatgttgtttatggttaaacatagaggaaattcca 60
||||||||||| ||||||||||| ||| ||||||||||| ||||||||||| ||||
Sbjct: 8 aaaaggtggatgttccttctatgcttacaggatttatggttaatcatagaggaaaatcca 67
Query: 61 c 61
|
Sbjct: 68 c 68
>RF00641;mir-154;CAAA01088157.1/21210-21131 10090:Mus musculus
(house mouse)
Length = 80
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 aaaaggtggatattccttctatg 23
|||||||||||||||||||||||
Sbjct: 8 aaaaggtggatattccttctatg 30
>RF00641;mir-154;AAYZ01424898.1/1376-1455 9978:Ochotona princeps
(American pika)
Length = 80
Score = 46.1 bits (23), Expect = 5e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 40 ttaaacatagaggaaattccacgtttt 66
|||| ||||||||||||||||||||||
Sbjct: 47 ttaatcatagaggaaattccacgtttt 73
>RF00641;mir-154;AAQR01332677.1/6164-6240 30611:Otolemur garnettii
(small-eared galago)
Length = 77
Score = 44.1 bits (22), Expect = 2e-04
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 6 gtggatattccttctatgtttatgttgtttatggttaaacatagaggaaa 55
|||||| ||||||||||||||| ||||||||||| |||||||||||
Sbjct: 10 gtggatgttccttctatgtttacaggatttatggttaatcatagaggaaa 59
>RF00641;mir-154;ABRQ01054372.1/2194-2273 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 44.1 bits (22), Expect = 2e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 33 tttatggttaaacatagaggaaattccacgtttt 66
|||||| |||| ||||||||||| ||||||||||
Sbjct: 40 tttatgattaatcatagaggaaaatccacgtttt 73
>RF00641;mir-154;AANG01662501.1/383-463 9685:Felis catus (domestic
cat)
Length = 81
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 3 aaggtggatattccttctatgttta 27
||||||||| |||||||||||||||
Sbjct: 10 aaggtggatgttccttctatgttta 34
