miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;AAKN02051949.1/133347-133425 10141:Cavia
porcellus (domestic guinea pig)
Length = 79
Score = 135 bits (68), Expect = 8e-32
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 5 gagaggttgtctgtgatgagttcgctttattaatgacgaatataacacagatggcctgtc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 gagaggttgtctgtgatgagttcgctttattaatgacgaatataacacagatggcctgtc 70
Query: 65 ttcagtac 72
||||||||
Sbjct: 71 ttcagtac 78
>RF00641;mir-154;AAQR01664935.1/16813-16890 30611:Otolemur
garnettii (small-eared galago)
Length = 78
Score = 121 bits (61), Expect = 1e-27
Identities = 71/73 (97%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 1 tgaggagaggttgtctgtgatgagttcgctttattaatgacgaatataacacagatggcc 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 tgagaagaggttgtctgtgatgagttcgctttattaatgacgaatataacacagatggcc 66
Query: 61 tgtcttcagtacc 73
||| |||||||||
Sbjct: 67 tgt-ttcagtacc 78
>RF00641;mir-154;ABRQ01054379.1/507-585 9813:Procavia capensis
(cape rock hyrax)
Length = 79
Score = 113 bits (57), Expect = 3e-25
Identities = 69/73 (94%)
Strand = Plus / Plus
Query: 1 tgaggagaggttgtctgtgatgagttcgctttattaatgacgaatataacacagatggcc 60
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 7 tgaggagaggctgtctgtgatgagttcgctttatcaatgacgaatataacacagatggcc 66
Query: 61 tgtcttcagtacc 73
||| ||||||||
Sbjct: 67 tgttctcagtacc 79
>RF00641;mir-154;AAYZ01254085.1/11201-11278 9978:Ochotona princeps
(American pika)
Length = 78
Score = 109 bits (55), Expect = 5e-24
Identities = 61/63 (96%)
Strand = Plus / Plus
Query: 1 tgaggagaggttgtctgtgatgagttcgctttattaatgacgaatataacacagatggcc 60
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 6 tgaggagaggttgtctgtgatgagttcgctgtattaatgtcgaatataacacagatggcc 65
Query: 61 tgt 63
|||
Sbjct: 66 tgt 68
>RF00641;mir-154;AAGW01274484.1/405-482 9986:Oryctolagus cuniculus
(rabbit)
Length = 78
Score = 97.6 bits (49), Expect = 2e-20
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 1 tgaggagaggttgtctgtgatgagttcgctttattaatgacgaatataacacagatggcc 60
||||| |||||||||||||||||||||||| |||||| | ||||||||||||||||||||
Sbjct: 6 tgaggggaggttgtctgtgatgagttcgctgtattaaagccgaatataacacagatggcc 65
Query: 61 tgtcttcag 69
||| |||||
Sbjct: 66 tgttttcag 74
>RF00641;mir-154;AAGV020430602.1/10-84 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 75
Score = 77.8 bits (39), Expect = 2e-14
Identities = 56/59 (94%), Gaps = 2/59 (3%)
Strand = Plus / Plus
Query: 12 tgtctgtgatgagttcgctttattaatgacgaatataacacagatggcctgtcttcagt 70
|||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||
Sbjct: 16 tgtctgtgatgagttcgctttatt-atgacgaatat-acacagatggcctgttttcagt 72
