miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00762;mir-412;CABD01018504.1/52208-52298 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 91
Score = 131 bits (66), Expect = 1e-30
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 12 ggatggtcgaccagttggaaagtaattgtttctaatgtacttcacctggtccactagccg 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16 ggatggtcgaccagttggaaagtaattgtttctaatgtacttcacctggtccactagccg 75
Query: 72 tccgta 77
||||||
Sbjct: 76 tccgta 81
>RF00762;mir-412;AALT01091711.1/638-727 42254:Sorex araneus
(European shrew)
Length = 90
Score = 127 bits (64), Expect = 2e-29
Identities = 76/80 (95%)
Strand = Plus / Plus
Query: 1 gggtacaggagggatggtcgaccagttggaaagtaattgtttctaatgtacttcacctgg 60
|||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 4 gggtacaggatggatggtcgaccagttggaaagtaattgtgtcgaatgtacttcacctgg 63
Query: 61 tccactagccgtccgtaccc 80
||||||||||||||| ||||
Sbjct: 64 tccactagccgtccgcaccc 83
>RF00762;mir-412;AAKN02051949.1/132908-132997 10141:Cavia
porcellus (domestic guinea pig)
Length = 90
Score = 115 bits (58), Expect = 9e-26
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 12 ggatggtcgaccagttggaaagtaattgtttctaatgtacttcacctggtccactagccg 71
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 15 ggatggtcgaccagttggaaagtaattgtctctaatgtacttcacctggtccactagccg 74
Query: 72 tc 73
||
Sbjct: 75 tc 76
>RF00762;mir-412;ABDC01257675.1/5683-5773 30608:Microcebus murinus
(gray mouse lemur)
Length = 91
Score = 113 bits (57), Expect = 3e-25
Identities = 66/69 (95%)
Strand = Plus / Plus
Query: 12 ggatggtcgaccagttggaaagtaattgtttctaatgtacttcacctggtccactagccg 71
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 16 ggatggtcgaccagttggaaagtaattgtccccaatgtacttcacctggtccactagccg 75
Query: 72 tccgtaccc 80
|||||||||
Sbjct: 76 tccgtaccc 84
>RF00762;mir-412;ABRQ01054379.1/32-122 9813:Procavia capensis
(cape rock hyrax)
Length = 91
Score = 101 bits (51), Expect = 1e-21
Identities = 64/67 (95%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 7 aggagggatggtcgaccagttggaaagtaattgtttctaatgtacttcacctggtccact 66
|||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 12 aggatggatggtcgaccagt-ggaaagtaattgtttataatgtacttcacctggtccact 70
Query: 67 agccgtc 73
|||||||
Sbjct: 71 agccgtc 77
>RF00762;mir-412;AAIY01437686.1/1059-969 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 91
Score = 87.7 bits (44), Expect = 2e-17
Identities = 53/56 (94%)
Strand = Plus / Plus
Query: 15 tggtcgaccagttggaaagtaattgtttctaatgtacttcacctggtccactagcc 70
|||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||
Sbjct: 19 tggtcgaccagttggaaagtaattttttataatgtatttcacctggtccactagcc 74
>RF00762;mir-412;AAEX02019639.1/169950-170039 9615:Canis lupus
familiaris (dog)
Length = 90
Score = 54.0 bits (27), Expect = 3e-07
Identities = 61/71 (85%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 1 gggtacaggagggatggtcgaccagttggaaagtaattgtttctaatgtacttcacctgg 60
|||||||||| ||||||||||||| ||||||||||||||| | || | | ||||||||
Sbjct: 4 gggtacaggacggatggtcgacca-atggaaagtaattgttgcgaagatgcatcacctgg 62
Query: 61 tccactagccg 71
| |||||||||
Sbjct: 63 tgcactagccg 73
>RF00762;mir-412;AANN01125401.1/69-157 9365:Erinaceus europaeus
(western European hedgehog)
Length = 89
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 43 ctaatgtacttcacctggtccactagccgtcc 74
|||||| |||||||||| ||||||||||||||
Sbjct: 45 ctaatggacttcacctgctccactagccgtcc 76
