miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00718;mir-431;AAYZ01391476.1/1833-1946 9978:Ochotona princeps
(American pika)
Length = 114
Score = 161 bits (81), Expect = 2e-39
Identities = 87/89 (97%)
Strand = Plus / Plus
Query: 1 cgtcctgcgaggtgtcttgcaggccgtcatgcaggccacactgacggtaacgttgcaggt 60
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 8 cgtcctgcgaggtgtcttgcaggccgtcacgcaggccactctgacggtaacgttgcaggt 67
Query: 61 cgtcttgcagggcttctcgcaagacgaca 89
|||||||||||||||||||||||||||||
Sbjct: 68 cgtcttgcagggcttctcgcaagacgaca 96
>RF00718;mir-431;ABRP01223356.1/1296-1409 132908:Pteropus vampyrus
(large flying fox)
Length = 114
Score = 147 bits (74), Expect = 3e-35
Identities = 83/86 (96%)
Strand = Plus / Plus
Query: 1 cgtcctgcgaggtgtcttgcaggccgtcatgcaggccacactgacggtaacgttgcaggt 60
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 8 cgtcctgcgaggtgtcttgcaggccgtcatgcaggccactctgtcggtaacgttgcaggt 67
Query: 61 cgtcttgcagggcttctcgcaagacg 86
||||||||||||| ||||||||||||
Sbjct: 68 cgtcttgcagggcgtctcgcaagacg 93
>RF00718;mir-431;ABRQ01643017.1/488-601 9813:Procavia capensis
(cape rock hyrax)
Length = 114
Score = 137 bits (69), Expect = 3e-32
Identities = 84/89 (94%)
Strand = Plus / Plus
Query: 1 cgtcctgcgaggtgtcttgcaggccgtcatgcaggccacactgacggtaacgttgcaggt 60
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 8 cgtcctgcggggtgtcttgcaggccgtcatgcaggccaccctgacggtaacgttgcaggt 67
Query: 61 cgtcttgcagggcttctcgcaagacgaca 89
|| | ||| ||||||||||||||||||||
Sbjct: 68 cgccctgctgggcttctcgcaagacgaca 96
