miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>sp|Q52QI2|RTL1_BOVIN Retrotransposon-like protein 1 OS=Bos taurus
GN=RTL1 PE=2 SV=2
Length = 1331
Score = 62.4 bits (150), Expect = 9e-10
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = -2
Query: 88 QDMEEPSSGPHREIKDPPNDLLQDLEES 5
QDMEEPSSGPHREIKDPPNDLLQDLEES
Sbjct: 64 QDMEEPSSGPHREIKDPPNDLLQDLEES 91
>sp|A6NKG5|RTL1_HUMAN Retrotransposon-like protein 1 OS=Homo sapiens
GN=RTL1 PE=2 SV=2
Length = 1359
Score = 56.6 bits (135), Expect = 5e-08
Identities = 25/28 (89%), Positives = 27/28 (96%)
Frame = -2
Query: 88 QDMEEPSSGPHREIKDPPNDLLQDLEES 5
QDMEEPSSGP +EI+DPPNDLLQDLEES
Sbjct: 75 QDMEEPSSGPRKEIEDPPNDLLQDLEES 102
>sp|Q7M732|RTL1_MOUSE Retrotransposon-like protein 1 OS=Mus musculus
GN=Rtl1 PE=2 SV=1
Length = 1744
Score = 43.1 bits (100), Expect = 5e-04
Identities = 17/27 (62%), Positives = 25/27 (92%)
Frame = -2
Query: 88 QDMEEPSSGPHREIKDPPNDLLQDLEE 8
Q++EEPSSGPH+E+++ P DLLQ++EE
Sbjct: 110 QEVEEPSSGPHQEMQELPTDLLQEVEE 136
