miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00723;mir-448;AAPE01293616.1/2463-2573 59463:Myotis lucifugus
(little brown bat)
Length = 111
Score = 161 bits (81), Expect = 2e-39
Identities = 100/105 (95%), Gaps = 1/105 (0%)
Strand = Plus / Plus
Query: 5 gggaggttgaacatcctgcatagtgctgccaggaaatccccattttatactaagaggggg 64
|||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||
Sbjct: 4 gggaggttgaacatcctgcatagtgctgccaggaaatccctattt-atactaagagtggg 62
Query: 65 ctggctggttgcatatgtaggatgtcccatctccccgcccgcttc 109
||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 63 ctggctggttgcatatgtaggatgtcccatctccctgcccacttc 107
>RF00723;mir-448;ABRQ01383699.1/6043-6154 9813:Procavia capensis
(cape rock hyrax)
Length = 112
Score = 147 bits (74), Expect = 3e-35
Identities = 98/106 (92%)
Strand = Plus / Plus
Query: 4 ggggaggttgaacatcctgcatagtgctgccaggaaatccccattttatactaagagggg 63
||||||||||||||||||||||||||||||||||||| ||| |||| || |||||||||
Sbjct: 3 ggggaggttgaacatcctgcatagtgctgccaggaaacccctatttcgtaataagagggg 62
Query: 64 gctggctggttgcatatgtaggatgtcccatctccccgcccgcttc 109
|| ||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 63 gcaggctggttgcatatgtaggatgtcccatctccctgcccacttc 108
>RF00723;mir-448;ABRO01488018.1/1178-1067 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 112
Score = 137 bits (69), Expect = 3e-32
Identities = 87/93 (93%)
Strand = Plus / Plus
Query: 6 ggaggttgaacatcctgcatagtgctgccaggaaatccccattttatactaagagggggc 65
||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||| ||
Sbjct: 5 ggaggttgaacatcctgcatagtgctgccaggaaaaccctattccatactaagagggagc 64
Query: 66 tggctggttgcatatgtaggatgtcccatctcc 98
|||||| ||||||||||||||||||||||||||
Sbjct: 65 tggctgtttgcatatgtaggatgtcccatctcc 97
>RF00723;mir-448;AAKN02039763.1/15790-15679 10141:Cavia porcellus
(domestic guinea pig)
Length = 112
Score = 121 bits (61), Expect = 2e-27
Identities = 85/93 (91%)
Strand = Plus / Plus
Query: 6 ggaggttgaacatcctgcatagtgctgccaggaaatccccattttatactaagagggggc 65
|||||||||||||||||||| ||||||||| |||||||| | | ||||||||||||| |
Sbjct: 5 ggaggttgaacatcctgcatggtgctgccacgaaatccctttgtcatactaagaggggac 64
Query: 66 tggctggttgcatatgtaggatgtcccatctcc 98
|||||||||||| ||||||||||||||||||||
Sbjct: 65 tggctggttgcacatgtaggatgtcccatctcc 97
>RF00723;mir-448;AALT01302712.1/526-635 42254:Sorex araneus
(European shrew)
Length = 110
Score = 107 bits (54), Expect = 3e-23
Identities = 93/105 (88%), Gaps = 2/105 (1%)
Strand = Plus / Plus
Query: 5 gggaggttgaacatcctgcatagtgctgccaggaaatccccattttatactaagaggggg 64
|||||||||||||||||||||||||||||||||||| ||| ||||| ||| ||||
Sbjct: 4 gggaggttgaacatcctgcatagtgctgccaggaaaatccc--gttatagtaaaagggca 61
Query: 65 ctggctggttgcatatgtaggatgtcccatctccccgcccgcttc 109
||| ||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 62 ctgactggttgcatatgtaggatgtcccatctccctgcccacttc 106
>RF00723;mir-448;ABRN01082043.1/467-578 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 112
Score = 75.8 bits (38), Expect = 1e-13
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 4 ggggaggttgaacatcctgcatagtgctgccaggaaatccccattttatactaagagggg 63
||||||| ||||||||||||||||| | ||||||||||| ||||||||||||||||||
Sbjct: 3 ggggaggctgaacatcctgcatagtaatcacaggaaatccctattttatactaagagggg 62
Query: 64 gc 65
||
Sbjct: 63 gc 64
>RF00723;mir-448;ABVD01951229.1/707-778 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 72
Score = 71.9 bits (36), Expect = 2e-12
Identities = 64/72 (88%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 17 atcctgcatagtgctgccaggaaatccccattttatactaagagggggctggct-ggttg 75
|||||||||| ||||||||||||| ||| ||| |||| ||||| |||||||||| |||||
Sbjct: 1 atcctgcataatgctgccaggaaacccctattatatagtaagatggggctggctgggttg 60
Query: 76 catatgtaggat 87
||||| ||||||
Sbjct: 61 catatataggat 72
