miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00711;mir-449;ABRO01253740.1/3377-3287 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 91
Score = 95.6 bits (48), Expect = 5e-20
Identities = 57/60 (95%)
Strand = Plus / Plus
Query: 1 tggcagtgtattgttagctggttgaatatatgaatggcatcagctaacaagcaactgcta 60
||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||
Sbjct: 16 tggcagtgtattgttagctggttgaatatgtgaatggcatcagctaacatgcacctgcta 75
>RF00711;mir-449;AALT01534765.1/2819-2909 42254:Sorex araneus
(European shrew)
Length = 91
Score = 85.7 bits (43), Expect = 5e-17
Identities = 55/59 (93%)
Strand = Plus / Plus
Query: 1 tggcagtgtattgttagctggttgaatatatgaatggcatcagctaacaagcaactgct 59
|||||||||||||||||||||||| |||| ||||| ||||||||||||| |||||||||
Sbjct: 16 tggcagtgtattgttagctggttggatatgtgaatagcatcagctaacatgcaactgct 74
>RF00711;mir-449;ABQO010597990.1/363-452 9315:Macropus eugenii
(tammar wallaby)
Length = 90
Score = 63.9 bits (32), Expect = 2e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 1 tggcagtgtattgttagctggttgaatatatgaatg 36
||||||||||||||||||||||||||||| ||||||
Sbjct: 16 tggcagtgtattgttagctggttgaatatctgaatg 51
>RF00711;mir-449;AAGW01346249.1/4500-4410 9986:Oryctolagus
cuniculus (rabbit)
Length = 91
Score = 63.9 bits (32), Expect = 2e-10
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 1 tggcagtgtattgttagctggttgaatatatgaatggcatcagctaacaagcaactgcta 60
||||||||||||||||||||||||||||| || || ||||||||||| |||||||||
Sbjct: 16 tggcagtgtattgttagctggttgaatatgtgtgtgatatcagctaacatacaactgcta 75
>RF00711;mir-449;AAIY01660884.1/5468-5558 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 91
Score = 63.9 bits (32), Expect = 2e-10
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 1 tggcagtgtattgttagctggttgaatatatgaatggcatcagctaac 48
||||||||||||||||||||||||||||| ||| | ||| ||||||||
Sbjct: 16 tggcagtgtattgttagctggttgaatatgtgagtagcaccagctaac 63
>RF00711;mir-449;CAAA01026551.1/5646-5736 10090:Mus musculus
(house mouse)
Length = 91
Score = 61.9 bits (31), Expect = 8e-10
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 1 tggcagtgtattgttagctggttgaatatatgaatggcatcagctaacaagcaactgct 59
||||||||||||||||||||||||| ||| ||| |||| ||||||||| || ||||||
Sbjct: 16 tggcagtgtattgttagctggttgagtatgtgagcggcaccagctaacatgcgactgct 74
>RF00711;mir-449;AAKN02031494.1/12810-12899 10141:Cavia porcellus
(domestic guinea pig)
Length = 90
Score = 61.9 bits (31), Expect = 8e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 1 tggcagtgtattgttagctggttgaatatat 31
|||||||||||||||||||||||||||||||
Sbjct: 16 tggcagtgtattgttagctggttgaatatat 46
>RF00711;mir-449;ABRQ01364111.1/2302-2212 9813:Procavia capensis
(cape rock hyrax)
Length = 91
Score = 56.0 bits (28), Expect = 5e-08
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 1 tggcagtgtattgttagctggttgaatatatgaatggcatcagctaacaagcaactgcta 60
||||||||||||||||||||||||||| | | || |||||||||||| ||| ||||||
Sbjct: 16 tggcagtgtattgttagctggttgaattagtaagtgacatcagctaacatgcagctgcta 75
>RF00711;mir-449;AAFR03035385.1/18957-18868 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 90
Score = 52.0 bits (26), Expect = 7e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 1 tggcagtgtattgttagctggttgaatatatgaa 34
||||||||||||||||||||||||| ||| ||||
Sbjct: 16 tggcagtgtattgttagctggttgactatctgaa 49
>RF00711;mir-449;AAPN01209390.1/1892-1981 9258:Ornithorhynchus
anatinus (platypus)
Length = 90
Score = 50.1 bits (25), Expect = 3e-06
Identities = 41/45 (91%), Gaps = 1/45 (2%)
Strand = Plus / Plus
Query: 1 tggcagtgtattgttagctggttgaatatatgaatggcatcagct 45
||||||||| ||||||||||||||||||| | ||||||| |||||
Sbjct: 16 tggcagtgt-ttgttagctggttgaatatttaaatggcaccagct 59
>RF00711;mir-449;AAWZ01022030.1/3210-3300 28377:Anolis
carolinensis (green anole)
Length = 91
Score = 42.1 bits (21), Expect = 7e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tggcagtgtattgttagctgg 21
|||||||||||||||||||||
Sbjct: 16 tggcagtgtattgttagctgg 36
