miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00708;mir-450;AACN010723377.1/501-591 9615:Canis lupus
familiaris (dog)
Length = 91
Score = 157 bits (79), Expect = 3e-38
Identities = 88/91 (96%)
Strand = Plus / Plus
Query: 1 gaaagatgctaaactgtttttgcgatgtgttcctaatatgcagtataaatatattgggag 60
|||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 1 gaaagatgctgaactgtttttgcgatgtgttcctaatatgcagtatgaacatattgggag 60
Query: 61 cattttgcatgcatggttttgtatcaatata 91
|||||||||||||||||||||||||||||||
Sbjct: 61 cattttgcatgcatggttttgtatcaatata 91
>RF00708;mir-450;AAYZ01306302.1/1275-1185 9978:Ochotona princeps
(American pika)
Length = 91
Score = 123 bits (62), Expect = 4e-28
Identities = 77/82 (93%)
Strand = Plus / Plus
Query: 1 gaaagatgctaaactgtttttgcgatgtgttcctaatatgcagtataaatatattgggag 60
|||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||
Sbjct: 1 gaaagatgctaaactgtttttgcgatatgttcctaatatgcactataactatattgggaa 60
Query: 61 cattttgcatgcatggttttgt 82
|||||||||||||| |||||||
Sbjct: 61 cattttgcatgcatagttttgt 82
>RF00708;mir-450;AANU01115741.1/25269-25359 9544:Macaca mulatta
(rhesus monkey)
Length = 91
Score = 117 bits (59), Expect = 3e-26
Identities = 77/83 (92%)
Strand = Plus / Plus
Query: 9 ctaaactgtttttgcgatgtgttcctaatatgcagtataaatatattgggagcattttgc 68
|||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||
Sbjct: 9 ctaaactgtttttgcgatgtgttcctaatatgtactataaatatattgggaacattttgc 68
Query: 69 atgcatggttttgtatcaatata 91
||| | ||||||||||||||||
Sbjct: 69 atgtgtagttttgtatcaatata 91
>RF00708;mir-450;ABRQ01123746.1/594-504 9813:Procavia capensis
(cape rock hyrax)
Length = 91
Score = 97.6 bits (49), Expect = 2e-20
Identities = 79/89 (88%)
Strand = Plus / Plus
Query: 1 gaaagatgctaaactgtttttgcgatgtgttcctaatatgcagtataaatatattgggag 60
||||||||||||||| |||||||||| ||||||||||||| ||||| ||||||||||
Sbjct: 1 gaaagatgctaaactatttttgcgatatgttcctaatatgttatataagtatattgggaa 60
Query: 61 cattttgcatgcatggttttgtatcaata 89
|||||||||| || ||||||||||||||
Sbjct: 61 cattttgcatctatagttttgtatcaata 89
>RF00708;mir-450;AAGV020284255.1/3919-3829 9361:Dasypus
novemcinctus (nine-banded armadillo)
Length = 91
Score = 89.7 bits (45), Expect = 6e-18
Identities = 75/85 (88%)
Strand = Plus / Plus
Query: 5 gatgctaaactgtttttgcgatgtgttcctaatatgcagtataaatatattgggagcatt 64
||||| ||||| |||||| ||||||||||||||||| | ||||| | |||||||| |||
Sbjct: 5 gatgcaaaactatttttgtgatgtgttcctaatatgaaatataagtgtattgggaatatt 64
Query: 65 ttgcatgcatggttttgtatcaata 89
|||||| ||||||||||||||||||
Sbjct: 65 ttgcatccatggttttgtatcaata 89
>RF00708;mir-450;AACN010723377.1/367-457 9615:Canis lupus
familiaris (dog)
Length = 91
Score = 87.7 bits (44), Expect = 2e-17
Identities = 77/88 (87%)
Strand = Plus / Plus
Query: 1 gaaagatgctaaactgtttttgcgatgtgttcctaatatgcagtataaatatattgggag 60
||||||||| |||| |||||||||||||||||||||||| | ||||| | ||||||||
Sbjct: 1 gaaagatgcctaactatttttgcgatgtgttcctaatatgtactataagtgtattgggaa 60
Query: 61 cattttgcatgcatggttttgtatcaat 88
|||||||||| ||| ||||||| |||||
Sbjct: 61 cattttgcattcatagttttgtgtcaat 88
>RF00708;mir-450;ABRQ01123746.1/420-330 9813:Procavia capensis
(cape rock hyrax)
Length = 91
Score = 87.7 bits (44), Expect = 2e-17
Identities = 71/80 (88%)
Strand = Plus / Plus
Query: 12 aactgtttttgcgatgtgttcctaatatgcagtataaatatattgggagcattttgcatg 71
|||| |||||| |||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 12 aactatttttgtgatgtgttcctaatattgtgtataaatatattgggaacattttgcatt 71
Query: 72 catggttttgtatcaatata 91
||||||||||||||||||
Sbjct: 72 tgtggttttgtatcaatata 91
>RF00708;mir-450;AAYZ01306302.1/1453-1363 9978:Ochotona princeps
(American pika)
Length = 91
Score = 81.8 bits (41), Expect = 1e-15
Identities = 77/89 (86%)
Strand = Plus / Plus
Query: 1 gaaagatgctaaactgtttttgcgatgtgttcctaatatgcagtataaatatattgggag 60
||||||||||||||| |||||||||||||||||||||||| | | ||| | |||||||
Sbjct: 1 gaaagatgctaaactatttttgcgatgtgttcctaatatgtaatgtaactgtattgggga 60
Query: 61 cattttgcatgcatggttttgtatcaata 89
|| || |||| ||| ||||||||||||||
Sbjct: 61 cacttggcattcatagttttgtatcaata 89
>RF00708;mir-450;AAQQ01708411.1/190-100 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 91
Score = 79.8 bits (40), Expect = 5e-15
Identities = 76/88 (86%)
Strand = Plus / Plus
Query: 2 aaagatgctaaactgtttttgcgatgtgttcctaatatgcagtataaatatattgggagc 61
||||||||| |||| |||||||||||||||||||||||| | || ||| |||||||| |
Sbjct: 2 aaagatgctgaactatttttgcgatgtgttcctaatatgtaataagaatgtattgggaac 61
Query: 62 attttgcatgcatggttttgtatcaata 89
||||||||| | ||||||||||||||
Sbjct: 62 attttgcatttgtagttttgtatcaata 89
>RF00708;mir-450;ABRO01450845.1/1386-1298 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 89
Score = 77.8 bits (39), Expect = 2e-14
Identities = 80/91 (87%), Gaps = 2/91 (2%)
Strand = Plus / Plus
Query: 1 gaaagatgctaaactgtttttgcgatgtgttcctaatatgcagtataaatatattgggag 60
||||||||||||| | ||||||||||||||| |||||||||| | | |||||| |||||
Sbjct: 1 gaaagatgctaaa-tatttttgcgatgtgttactaatatgcactttgaatatactgggaa 59
Query: 61 cattttgcatgcatggttttgtatcaatata 91
||||| |||||| | ||||||||||||||||
Sbjct: 60 catttcgcatgc-ttgttttgtatcaatata 89
>RF00708;mir-450;CAAA01222947.1/3684-3594 10090:Mus musculus
(house mouse)
Length = 91
Score = 73.8 bits (37), Expect = 3e-13
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 14 ctgtttttgcgatgtgttcctaatatgcagtataaatatattgggagcattttgcat 70
||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||
Sbjct: 14 ctgtttttgcgatgtgttcctaatatgtgctataattatattgggaacattttgcat 70
>RF00708;mir-450;AANN01800872.1/333-426 9365:Erinaceus europaeus
(western European hedgehog)
Length = 94
Score = 65.9 bits (33), Expect = 8e-11
Identities = 49/54 (90%), Gaps = 4/54 (7%)
Strand = Plus / Plus
Query: 24 gatgtgttcctaatatgcagt----ataaatatattgggagcattttgcatgca 73
||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 23 gatgtgttcctaatatgcagtttagataaatatattgggagcactttgcatgca 76
>RF00708;mir-450;BX649621.5/156260-156170 10090:Mus musculus
(house mouse)
Length = 91
Score = 63.9 bits (32), Expect = 3e-10
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 3 aagatgctaaactgtttttgcgatgtgttcctaatatgcagtataaatatattggg 58
|||||||| |||| |||||||||||||||||||||||| | ||| | |||||||||
Sbjct: 3 aagatgctgaactatttttgcgatgtgttcctaatatgtactatgagtatattggg 58
>RF00708;mir-450;ABRO01450845.1/1546-1456 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 91
Score = 63.9 bits (32), Expect = 3e-10
Identities = 74/88 (84%)
Strand = Plus / Plus
Query: 2 aaagatgctaaactgtttttgcgatgtgttcctaatatgcagtataaatatattgggagc 61
|||||||||| ||| |||||||||||||||| ||||||| ||| ||| ||||||| |
Sbjct: 2 aaagatgctagactatttttgcgatgtgttcataatatgttatatgaatgtattggggac 61
Query: 62 attttgcatgcatggttttgtatcaata 89
|| |||||| ||| |||| |||||||||
Sbjct: 62 atcttgcattcatagtttcgtatcaata 89
>RF00708;mir-450;AAKN02053360.1/153106-153014 10141:Cavia
porcellus (domestic guinea pig)
Length = 93
Score = 63.9 bits (32), Expect = 3e-10
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 44 tataaatatattgggagcattttgcatgcatggttttgtatcaatata 91
||||| |||||||||| |||||||||| ||| ||||||||||||||||
Sbjct: 46 tataagtatattgggaacattttgcatccatagttttgtatcaatata 93
>RF00708;mir-450;AABR04140564.1/3502-3412 10116:Rattus norvegicus
(Norway rat)
Length = 91
Score = 58.0 bits (29), Expect = 2e-08
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 14 ctgtttttgcgatgtgttcctaatatgcagtataaatatattgggagcattttgcat 70
|||||||||||||||||||||||| || || || |||||||||| ||||||||||
Sbjct: 14 ctgtttttgcgatgtgttcctaatgtgtgctacaattatattgggaacattttgcat 70
>RF00708;mir-450;CAAA01222947.1/3522-3431 10090:Mus musculus
(house mouse)
Length = 92
Score = 56.0 bits (28), Expect = 8e-08
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 52 tattgggagcattttgcatgcatggttttgtatcaatata 91
|||||||| |||||||||||||| |||||||||||||||
Sbjct: 53 tattgggaacattttgcatgcataattttgtatcaatata 92
>RF00708;mir-450;AAGU02249219.1/617-526 9785:Loxodonta africana
(African savanna elephant)
Length = 92
Score = 56.0 bits (28), Expect = 8e-08
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 52 tattgggagcattttgcatgcatggttttgtatcaatata 91
||||||||||||||||||| ||| |||||||||| |||||
Sbjct: 53 tattgggagcattttgcatccatagttttgtatcgatata 92
