miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00708;mir-450;AAGU02249219.1/617-526 9785:Loxodonta africana
(African savanna elephant)
Length = 92
Score = 121 bits (61), Expect = 1e-27
Identities = 73/77 (94%)
Strand = Plus / Plus
Query: 3 caaaattatttttgcaatatgttcctgaatatgtaatataagtgtattgggaacattttg 62
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 9 caaaattatttttgcaatatgttcctgaatatgtaagccaagtgtattgggagcattttg 68
Query: 63 catccatagttttgtat 79
|||||||||||||||||
Sbjct: 69 catccatagttttgtat 85
>RF00708;mir-450;AAKN02053360.1/153106-153014 10141:Cavia
porcellus (domestic guinea pig)
Length = 93
Score = 105 bits (53), Expect = 8e-23
Identities = 72/76 (94%), Gaps = 3/76 (3%)
Strand = Plus / Plus
Query: 6 aattatttttgcaatatgttcctgaatatgtaatata--agtgtattgggaacattttgc 63
||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||
Sbjct: 12 aattatttttgcaatatgttcctga-tatgtaatatataagtatattgggaacattttgc 70
Query: 64 atccatagttttgtat 79
||||||||||||||||
Sbjct: 71 atccatagttttgtat 86
>RF00708;mir-450;CAAA01222947.1/3522-3431 10090:Mus musculus
(house mouse)
Length = 92
Score = 93.7 bits (47), Expect = 3e-19
Identities = 71/79 (89%)
Strand = Plus / Plus
Query: 1 tacaaaattatttttgcaatatgttcctgaatatgtaatataagtgtattgggaacattt 60
|||| ||||||||||||| |||||||||||||| ||| ||||| |||||||||||||||
Sbjct: 7 tacagaattatttttgcagtatgttcctgaatacataacataagcgtattgggaacattt 66
Query: 61 tgcatccatagttttgtat 79
||||| |||| ||||||||
Sbjct: 67 tgcatgcataattttgtat 85
>RF00708;mir-450;ABRQ01123746.1/594-504 9813:Procavia capensis
(cape rock hyrax)
Length = 91
Score = 93.7 bits (47), Expect = 3e-19
Identities = 66/71 (92%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 9 tatttttgcaatatgttcctgaatatgtaatataagtgtattgggaacattttgcatcca 68
||||||||| |||||||||| ||||||| |||||||| |||||||||||||||||||| |
Sbjct: 15 tatttttgcgatatgttcct-aatatgttatataagtatattgggaacattttgcatcta 73
Query: 69 tagttttgtat 79
|||||||||||
Sbjct: 74 tagttttgtat 84
>RF00708;mir-450;AACN010723377.1/367-457 9615:Canis lupus
familiaris (dog)
Length = 91
Score = 89.7 bits (45), Expect = 5e-18
Identities = 64/69 (92%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 9 tatttttgcaatatgttcctgaatatgtaatataagtgtattgggaacattttgcatcca 68
||||||||| || ||||||| |||||||| ||||||||||||||||||||||||||| ||
Sbjct: 15 tatttttgcgatgtgttcct-aatatgtactataagtgtattgggaacattttgcattca 73
Query: 69 tagttttgt 77
|||||||||
Sbjct: 74 tagttttgt 82
>RF00708;mir-450;AAGV020284255.1/3919-3829 9361:Dasypus
novemcinctus (nine-banded armadillo)
Length = 91
Score = 81.8 bits (41), Expect = 1e-15
Identities = 69/77 (89%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 3 caaaattatttttgcaatatgttcctgaatatgtaatataagtgtattgggaacattttg 62
||||| |||||||| || ||||||| |||||| ||||||||||||||||||| ||||||
Sbjct: 9 caaaactatttttgtgatgtgttcct-aatatgaaatataagtgtattgggaatattttg 67
Query: 63 catccatagttttgtat 79
||||||| |||||||||
Sbjct: 68 catccatggttttgtat 84
>RF00708;mir-450;AAYZ01306302.1/1275-1185 9978:Ochotona princeps
(American pika)
Length = 91
Score = 69.9 bits (35), Expect = 4e-12
Identities = 60/67 (89%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 11 tttttgcaatatgttcctgaatatgtaatataagtgtattgggaacattttgcatccata 70
||||||| |||||||||| |||||| | ||||| | ||||||||||||||||||| ||||
Sbjct: 17 tttttgcgatatgttcct-aatatgcactataactatattgggaacattttgcatgcata 75
Query: 71 gttttgt 77
|||||||
Sbjct: 76 gttttgt 82
>RF00708;mir-450;ABRQ01123746.1/258-164 9813:Procavia capensis
(cape rock hyrax)
Length = 95
Score = 67.9 bits (34), Expect = 2e-11
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 3 caaaattatttttgcaatatgttcctgaatatgtaatataagtgtattgggaacattttg 62
||||||||||| ||||| |||||||||| || ||| |||||||||||||| ||| |||
Sbjct: 9 caaaattatttatgcaagatgttcctgactacataaggtaagtgtattgggagcatattg 68
Query: 63 catccatagt 72
||||||||||
Sbjct: 69 catccatagt 78
>RF00708;mir-450;AAQQ01708411.1/190-100 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 91
Score = 61.9 bits (31), Expect = 1e-09
Identities = 62/71 (87%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 9 tatttttgcaatatgttcctgaatatgtaatataagtgtattgggaacattttgcatcca 68
||||||||| || ||||||| ||||||||||| | |||||||||||||||||||||
Sbjct: 15 tatttttgcgatgtgttcct-aatatgtaataagaatgtattgggaacattttgcatttg 73
Query: 69 tagttttgtat 79
|||||||||||
Sbjct: 74 tagttttgtat 84
>RF00708;mir-450;AAYZ01306302.1/1453-1363 9978:Ochotona princeps
(American pika)
Length = 91
Score = 61.9 bits (31), Expect = 1e-09
Identities = 62/71 (87%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 9 tatttttgcaatatgttcctgaatatgtaatataagtgtattgggaacattttgcatcca 68
||||||||| || ||||||| |||||||||| ||| ||||||||| ||| || |||| ||
Sbjct: 15 tatttttgcgatgtgttcct-aatatgtaatgtaactgtattggggacacttggcattca 73
Query: 69 tagttttgtat 79
|||||||||||
Sbjct: 74 tagttttgtat 84
>RF00708;mir-450;AANU01115741.1/25269-25359 9544:Macaca mulatta
(rhesus monkey)
Length = 91
Score = 58.0 bits (29), Expect = 2e-08
Identities = 60/69 (86%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 11 tttttgcaatatgttcctgaatatgtaatataagtgtattgggaacattttgcatccata 70
||||||| || ||||||| |||||||| ||||| | ||||||||||||||||||| ||
Sbjct: 17 tttttgcgatgtgttcct-aatatgtactataaatatattgggaacattttgcatgtgta 75
Query: 71 gttttgtat 79
|||||||||
Sbjct: 76 gttttgtat 84
>RF00708;mir-450;AAIY01247667.1/662-753 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 92
Score = 54.0 bits (27), Expect = 3e-07
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 2 acaaaattatttttgcaatatgttcctgaatatgtaatataagtgtattgggaacattt 60
||||| ||||||||| ||||||||| ||| ||||||| |||| || ||||||||||||
Sbjct: 8 acaaacttatttttgtaatatgttcttgagtatgtaacataaatgccttgggaacattt 66
>RF00708;mir-450;CAAA01222947.1/3684-3594 10090:Mus musculus
(house mouse)
Length = 91
Score = 46.1 bits (23), Expect = 6e-05
Identities = 48/55 (87%), Gaps = 1/55 (1%)
Strand = Plus / Plus
Query: 11 tttttgcaatatgttcctgaatatgtaatataagtgtattgggaacattttgcat 65
||||||| || ||||||| ||||||| ||||| | |||||||||||||||||||
Sbjct: 17 tttttgcgatgtgttcct-aatatgtgctataattatattgggaacattttgcat 70
