miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00722;mir-451;ABQO010853698.1/772-701 9315:Macropus eugenii
(tammar wallaby)
Length = 72
Score = 103 bits (52), Expect = 3e-22
Identities = 52/52 (100%)
Strand = Plus / Plus
Query: 13 gaggaaaccgttaccattactgtgtttagtaatggtaacggttctcttgctg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 gaggaaaccgttaccattactgtgtttagtaatggtaacggttctcttgctg 64
>RF00722;mir-451;AAKN02033337.1/59671-59742 10141:Cavia porcellus
(domestic guinea pig)
Length = 72
Score = 95.6 bits (48), Expect = 7e-20
Identities = 60/64 (93%)
Strand = Plus / Plus
Query: 1 cttgggaatgtcgaggaaaccgttaccattactgtgtttagtaatggtaacggttctctt 60
|||||| ||| ||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 1 cttggggatggcgaggaaaccgttaccattactgagtttagtaatggtgacggttctctt 60
Query: 61 gctg 64
||||
Sbjct: 61 gctg 64
>RF00722;mir-451;AAPN01323131.1/127-56 9258:Ornithorhynchus
anatinus (platypus)
Length = 72
Score = 89.7 bits (45), Expect = 4e-18
Identities = 51/53 (96%)
Strand = Plus / Plus
Query: 12 cgaggaaaccgttaccattactgtgtttagtaatggtaacggttctcttgctg 64
||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 12 cgaggaaaccgttaccattactgagtttagtaatggtaacggttctctggctg 64
>RF00722;mir-451;AAGU02141945.1/2025-1955 9785:Loxodonta africana
(African savanna elephant)
Length = 71
Score = 87.7 bits (44), Expect = 2e-17
Identities = 60/64 (93%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 1 cttgggaatgtcgaggaaaccgttaccattactgtgtttagtaatggtaacggttctctt 60
|||||||||| ||||||| ||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 1 cttgggaatgacgaggaa-ccgttaccattactgagtttagtaatggtaatggttctctt 59
Query: 61 gctg 64
||||
Sbjct: 60 gctg 63
>RF00722;mir-451;AAFR03044825.1/5420-5349 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 72
Score = 79.8 bits (40), Expect = 4e-15
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 15 ggaaaccgttaccattactgtgtttagtaatggtaacggttctc 58
|||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 15 ggaaaccgttaccattactgtgtttagtaatggtaagggttctc 58
>RF00722;mir-451;ABQF01026376.1/875-804 59729:Taeniopygia guttata
Length = 72
Score = 77.8 bits (39), Expect = 2e-14
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 15 ggaaaccgttaccattactgtgtttagtaatggtaacggttct 57
|||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 15 ggaaaccgttaccattactgagtttagtaatggtaacggttct 57
>RF00722;mir-451;AADN02025858.1/509-580 9031:Gallus gallus
(chicken)
Length = 72
Score = 77.8 bits (39), Expect = 2e-14
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 15 ggaaaccgttaccattactgtgtttagtaatggtaacggttct 57
|||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 15 ggaaaccgttaccattactgagtttagtaatggtaacggttct 57
>RF00722;mir-451;BX548073.8/159677-159748 7955:Danio rerio
(zebrafish)
Length = 72
Score = 67.9 bits (34), Expect = 2e-11
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 16 gaaaccgttaccattactgtgtttagtaatggtaacggttct 57
||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 16 gaaaccgttaccattactgagtttagtaatggtaagggttct 57
>RF00722;mir-451;BAAF04033966.1/3754-3826 8090:Oryzias latipes
(Japanese medaka)
Length = 73
Score = 63.9 bits (32), Expect = 2e-10
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 17 aaaccgttaccattactgtgtttagtaatggtaacggttc 56
|||||||||||||||||| ||||||||||||||| |||||
Sbjct: 17 aaaccgttaccattactgagtttagtaatggtaagggttc 56
>RF00722;mir-451;CAAB01000931.1/60591-60519 31033:Takifugu
rubripes
Length = 73
Score = 42.1 bits (21), Expect = 9e-04
Identities = 37/41 (90%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 17 aaaccgttaccattactgtgttt-agtaatggtaacggttc 56
|||||||||||||||||| |||| ||| ||||||| |||||
Sbjct: 17 aaaccgttaccattactgagtttcagttatggtaagggttc 57
