miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00708;mir-450;AACN010723377.1/367-457 9615:Canis lupus
familiaris (dog)
Length = 91
Score = 127 bits (64), Expect = 3e-29
Identities = 82/88 (93%)
Strand = Plus / Plus
Query: 1 gaaagatgctcaactatttttgcgatgtgttcctaatacgtaatataaatgtattgggaa 60
||||||||| ||||||||||||||||||||||||||| ||| ||||| |||||||||||
Sbjct: 1 gaaagatgcctaactatttttgcgatgtgttcctaatatgtactataagtgtattgggaa 60
Query: 61 cattttgcattcatagttttgtatcaat 88
|||||||||||||||||||||| |||||
Sbjct: 61 cattttgcattcatagttttgtgtcaat 88
>RF00708;mir-450;AAQQ01708411.1/190-100 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 91
Score = 127 bits (64), Expect = 3e-29
Identities = 82/88 (93%)
Strand = Plus / Plus
Query: 2 aaagatgctcaactatttttgcgatgtgttcctaatacgtaatataaatgtattgggaac 61
||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 2 aaagatgctgaactatttttgcgatgtgttcctaatatgtaataagaatgtattgggaac 61
Query: 62 attttgcattcatagttttgtatcaata 89
|||||||||| ||||||||||||||||
Sbjct: 62 attttgcatttgtagttttgtatcaata 89
>RF00708;mir-450;AAYZ01306302.1/1453-1363 9978:Ochotona princeps
(American pika)
Length = 91
Score = 121 bits (61), Expect = 2e-27
Identities = 82/89 (92%)
Strand = Plus / Plus
Query: 1 gaaagatgctcaactatttttgcgatgtgttcctaatacgtaatataaatgtattgggaa 60
|||||||||| ||||||||||||||||||||||||||| ||||| ||| ||||||||| |
Sbjct: 1 gaaagatgctaaactatttttgcgatgtgttcctaatatgtaatgtaactgtattgggga 60
Query: 61 cattttgcattcatagttttgtatcaata 89
|| || |||||||||||||||||||||||
Sbjct: 61 cacttggcattcatagttttgtatcaata 89
>RF00708;mir-450;ABRQ01123746.1/594-504 9813:Procavia capensis
(cape rock hyrax)
Length = 91
Score = 113 bits (57), Expect = 4e-25
Identities = 81/89 (91%)
Strand = Plus / Plus
Query: 1 gaaagatgctcaactatttttgcgatgtgttcctaatacgtaatataaatgtattgggaa 60
|||||||||| ||||||||||||||| ||||||||||| || |||||| | |||||||||
Sbjct: 1 gaaagatgctaaactatttttgcgatatgttcctaatatgttatataagtatattgggaa 60
Query: 61 cattttgcattcatagttttgtatcaata 89
|||||||||| |||||||||||||||||
Sbjct: 61 cattttgcatctatagttttgtatcaata 89
>RF00708;mir-450;ABRO01450845.1/1546-1456 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 91
Score = 103 bits (52), Expect = 4e-22
Identities = 79/88 (89%)
Strand = Plus / Plus
Query: 2 aaagatgctcaactatttttgcgatgtgttcctaatacgtaatataaatgtattgggaac 61
||||||||| |||||||||||||||||||| ||||| || |||| ||||||||||| ||
Sbjct: 2 aaagatgctagactatttttgcgatgtgttcataatatgttatatgaatgtattggggac 61
Query: 62 attttgcattcatagttttgtatcaata 89
|| ||||||||||||||| |||||||||
Sbjct: 62 atcttgcattcatagtttcgtatcaata 89
>RF00708;mir-450;AAGV020284255.1/3919-3829 9361:Dasypus
novemcinctus (nine-banded armadillo)
Length = 91
Score = 99.6 bits (50), Expect = 6e-21
Identities = 71/78 (91%)
Strand = Plus / Plus
Query: 12 aactatttttgcgatgtgttcctaatacgtaatataaatgtattgggaacattttgcatt 71
||||||||||| ||||||||||||||| | ||||||| ||||||||||| |||||||||
Sbjct: 12 aactatttttgtgatgtgttcctaatatgaaatataagtgtattgggaatattttgcatc 71
Query: 72 catagttttgtatcaata 89
||| ||||||||||||||
Sbjct: 72 catggttttgtatcaata 89
>RF00708;mir-450;AANU01115741.1/25269-25359 9544:Macaca mulatta
(rhesus monkey)
Length = 91
Score = 99.6 bits (50), Expect = 6e-21
Identities = 71/78 (91%)
Strand = Plus / Plus
Query: 12 aactatttttgcgatgtgttcctaatacgtaatataaatgtattgggaacattttgcatt 71
|||| |||||||||||||||||||||| ||| ||||||| |||||||||||||||||||
Sbjct: 12 aactgtttttgcgatgtgttcctaatatgtactataaatatattgggaacattttgcatg 71
Query: 72 catagttttgtatcaata 89
||||||||||||||||
Sbjct: 72 tgtagttttgtatcaata 89
>RF00708;mir-450;AAYZ01306302.1/1275-1185 9978:Ochotona princeps
(American pika)
Length = 91
Score = 91.7 bits (46), Expect = 1e-18
Identities = 73/82 (89%)
Strand = Plus / Plus
Query: 1 gaaagatgctcaactatttttgcgatgtgttcctaatacgtaatataaatgtattgggaa 60
|||||||||| |||| |||||||||| ||||||||||| | | ||||| | |||||||||
Sbjct: 1 gaaagatgctaaactgtttttgcgatatgttcctaatatgcactataactatattgggaa 60
Query: 61 cattttgcattcatagttttgt 82
|||||||||| |||||||||||
Sbjct: 61 cattttgcatgcatagttttgt 82
>RF00708;mir-450;AACN010723377.1/501-591 9615:Canis lupus
familiaris (dog)
Length = 91
Score = 89.7 bits (45), Expect = 6e-18
Identities = 78/89 (87%)
Strand = Plus / Plus
Query: 1 gaaagatgctcaactatttttgcgatgtgttcctaatacgtaatataaatgtattgggaa 60
|||||||||| |||| |||||||||||||||||||||| | | ||| || ||||||||
Sbjct: 1 gaaagatgctgaactgtttttgcgatgtgttcctaatatgcagtatgaacatattgggag 60
Query: 61 cattttgcattcatagttttgtatcaata 89
|||||||||| ||| ||||||||||||||
Sbjct: 61 cattttgcatgcatggttttgtatcaata 89
>RF00708;mir-450;ABRQ01123746.1/420-330 9813:Procavia capensis
(cape rock hyrax)
Length = 91
Score = 83.8 bits (42), Expect = 3e-16
Identities = 72/82 (87%)
Strand = Plus / Plus
Query: 8 gctcaactatttttgcgatgtgttcctaatacgtaatataaatgtattgggaacattttg 67
||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 8 gctcaactatttttgtgatgtgttcctaatattgtgtataaatatattgggaacattttg 67
Query: 68 cattcatagttttgtatcaata 89
|||| | ||||||||||||||
Sbjct: 68 catttgtggttttgtatcaata 89
>RF00708;mir-450;AAKN02053360.1/153106-153014 10141:Cavia
porcellus (domestic guinea pig)
Length = 93
Score = 75.8 bits (38), Expect = 8e-14
Identities = 68/77 (88%), Gaps = 2/77 (2%)
Strand = Plus / Plus
Query: 15 tatttttgcgatgtgttcctaatacgtaatataaatgtat--tgggaacattttgcattc 72
||||||||| || ||||||| ||| |||||||| | |||| |||||||||||||||| |
Sbjct: 15 tatttttgcaatatgttcctgatatgtaatatataagtatattgggaacattttgcatcc 74
Query: 73 atagttttgtatcaata 89
|||||||||||||||||
Sbjct: 75 atagttttgtatcaata 91
>RF00708;mir-450;CAAA01222947.1/3684-3594 10090:Mus musculus
(house mouse)
Length = 91
Score = 73.8 bits (37), Expect = 3e-13
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 17 tttttgcgatgtgttcctaatacgtaatataaatgtattgggaacattttgcattcatag 76
|||||||||||||||||||||| || ||||| | ||||||||||||||||||| ||||
Sbjct: 17 tttttgcgatgtgttcctaatatgtgctataattatattgggaacattttgcataaatag 76
Query: 77 ttttgtatcaata 89
||||| ||||||
Sbjct: 77 ctttgtgtcaata 89
>RF00708;mir-450;CAAA01222947.1/3522-3431 10090:Mus musculus
(house mouse)
Length = 92
Score = 63.9 bits (32), Expect = 3e-10
Identities = 66/76 (86%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 15 tatttttgcgatgtgttcct-aatacgtaatataaatgtattgggaacattttgcattca 73
||||||||| | ||||||| ||||| ||| |||| |||||||||||||||||||| ||
Sbjct: 15 tatttttgcagtatgttcctgaatacataacataagcgtattgggaacattttgcatgca 74
Query: 74 tagttttgtatcaata 89
|| |||||||||||||
Sbjct: 75 taattttgtatcaata 90
>RF00708;mir-450;BX649621.5/156260-156170 10090:Mus musculus
(house mouse)
Length = 91
Score = 63.9 bits (32), Expect = 3e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 3 aagatgctcaactatttttgcgatgtgttcctaata 38
|||||||| |||||||||||||||||||||||||||
Sbjct: 3 aagatgctgaactatttttgcgatgtgttcctaata 38
>RF00708;mir-450;AABR04140564.1/3502-3412 10116:Rattus norvegicus
(Norway rat)
Length = 91
Score = 56.0 bits (28), Expect = 8e-08
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 17 tttttgcgatgtgttcctaatacgtaatataaatgtattgggaacattttgcattcatag 76
||||||||||||||||||||| || || || | ||||||||||||||||||| ||||
Sbjct: 17 tttttgcgatgtgttcctaatgtgtgctacaattatattgggaacattttgcataaatag 76
Query: 77 tttt 80
||||
Sbjct: 77 tttt 80
>RF00708;mir-450;AAGU02249219.1/617-526 9785:Loxodonta africana
(African savanna elephant)
Length = 92
Score = 56.0 bits (28), Expect = 8e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 50 tgtattgggaacattttgcattcatagttttgtatc 85
|||||||||| |||||||||| ||||||||||||||
Sbjct: 51 tgtattgggagcattttgcatccatagttttgtatc 86
>RF00708;mir-450;ABRO01450845.1/1386-1298 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 89
Score = 50.1 bits (25), Expect = 5e-06
Identities = 75/89 (84%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 1 gaaagatgctcaactatttttgcgatgtgttcctaatacgtaatataaatgtattgggaa 60
|||||||||| || ||||||||||||||||| |||||| | | | | ||| || ||||||
Sbjct: 1 gaaagatgctaaa-tatttttgcgatgtgttactaatatgcactttgaatatactgggaa 59
Query: 61 cattttgcattcatagttttgtatcaata 89
||||| |||| | | ||||||||||||||
Sbjct: 60 catttcgcatgc-ttgttttgtatcaata 87
