miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00746;mir-454;ABRQ01507750.1/1602-1488 9813:Procavia capensis
(cape rock hyrax)
Length = 115
Score = 121 bits (61), Expect = 1e-27
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 1 agaaccctatcgatattgtctctgctgtgtaaatcgctctgagtagtgcaatattgctta 60
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 21 agaaccctatcgatattgtctctgctgtgtaaatagttctgagtagtgcaatattgctta 80
Query: 61 tagggtttt 69
|||||||||
Sbjct: 81 tagggtttt 89
>RF00746;mir-454;AAVX01021344.1/1948-2058 7868:Callorhinchus milii
(ghost shark)
Length = 111
Score = 89.7 bits (45), Expect = 4e-18
Identities = 60/65 (92%)
Strand = Plus / Plus
Query: 4 accctatcgatattgtctctgctgtgtaaatcgctctgagtagtgcaatattgcttatag 63
||||||||||||||| ||||||| |||| || ||| ||||||||||||||||||||||||
Sbjct: 24 accctatcgatattgcctctgctttgtagatggctgtgagtagtgcaatattgcttatag 83
Query: 64 ggttt 68
|||||
Sbjct: 84 ggttt 88
>RF00746;mir-454;AAFR03045417.1/66257-66371 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 115
Score = 79.8 bits (40), Expect = 4e-15
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 2 gaaccctatcgatattgtctctgctgtgtaaatcgctctgagtagtgcaatattgcttat 61
|||||||||| || | |||||||||||||| || ||| | ||||||||||||||||||||
Sbjct: 22 gaaccctatcaatgtggtctctgctgtgtacatagctgtaagtagtgcaatattgcttat 81
Query: 62 agggtttt 69
||||||||
Sbjct: 82 agggtttt 89
>RF00746;mir-454;ABRT010588575.1/1885-2001 9478:Tarsius syrichta
(Philippine tarsier)
Length = 117
Score = 65.9 bits (33), Expect = 6e-11
Identities = 52/57 (91%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 7 ctatcgata-ttgtctctgctgtgtaaatcgctctgagtagtgcaatattgcttata 62
||||||||| |||||||||||||| |||| | ||||||||||||| |||||||||||
Sbjct: 27 ctatcgataattgtctctgctgtgaaaatagttctgagtagtgcagtattgcttata 83
>RF00746;mir-454;BX957246.7/151285-151170 7955:Danio rerio
(zebrafish)
Length = 116
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 41 gagtagtgcaatattgcttatagggt 66
||||||||||||||||||||||||||
Sbjct: 63 gagtagtgcaatattgcttatagggt 88
>RF00746;mir-454;AANH01010010.1/101669-101555 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 115
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 41 gagtagtgcaatattgcttatagggt 66
||||||||||||||||||||||||||
Sbjct: 63 gagtagtgcaatattgcttatagggt 88
>RF00746;mir-454;AAWZ01024587.1/22473-22587 28377:Anolis
carolinensis (green anole)
Length = 115
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 42 agtagtgcaatattgcttatagggt 66
|||||||||||||||||||||||||
Sbjct: 62 agtagtgcaatattgcttatagggt 86
>RF00746;mir-454;AADN02034763.1/4411-4297 9031:Gallus gallus
(chicken)
Length = 115
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 42 agtagtgcaatattgcttatagggt 66
|||||||||||||||||||||||||
Sbjct: 58 agtagtgcaatattgcttatagggt 82
>RF00746;mir-454;AC091299.2/31120-31004 7955:Danio rerio
(zebrafish)
Length = 117
Score = 50.1 bits (25), Expect = 3e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 41 gagtagtgcaatattgcttatagggtttt 69
|||||||||||||||||| ||||||||||
Sbjct: 63 gagtagtgcaatattgctaatagggtttt 91
>RF00746;mir-454;CAAB01003137.1/22509-22626 31033:Takifugu
rubripes
Length = 118
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 42 agtagtgcaatattgcttatagggt 66
|||||||||||||||||||||||||
Sbjct: 64 agtagtgcaatattgcttatagggt 88
>RF00746;mir-454;BAAE01186103.1/68-179 8090:Oryzias latipes
(Japanese medaka)
Length = 112
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 42 agtagtgcaatattgcttatagggt 66
|||||||||||||||||||||||||
Sbjct: 63 agtagtgcaatattgcttatagggt 87
>RF00746;mir-454;AAVX01227898.1/233-348 7868:Callorhinchus milii
(ghost shark)
Length = 116
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 42 agtagtgcaatattgcttatagggtttt 69
||||||||||||| ||||||||||||||
Sbjct: 63 agtagtgcaatatcgcttatagggtttt 90
>RF00746;mir-454;AAIY01209324.1/410-527 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 118
Score = 46.1 bits (23), Expect = 5e-05
Identities = 42/47 (89%), Gaps = 1/47 (2%)
Strand = Plus / Plus
Query: 19 tctctgctgtgtaaatcgctct-gagtagtgcaatattgcttatagg 64
|||||||||||||||| |||| |||||||||| |||||||| ||||
Sbjct: 37 tctctgctgtgtaaatatctcttgagtagtgcagtattgcttgtagg 83
