miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;ABRQ01054376.1/2766-2844 9813:Procavia capensis
(cape rock hyrax)
Length = 79
Score = 145 bits (73), Expect = 8e-35
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 1 acttgaagagaggctggccgtgatgaattcgattcatcaaagcgagtcatacacggctct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 acttgaagagaggctggccgtgatgaattcgattcatcaaagcgagtcatacacggctct 63
Query: 61 cctctcttttagt 73
|||||||||||||
Sbjct: 64 cctctcttttagt 76
>RF00641;mir-154;EU616812.1/2503-2581 10090:Mus musculus (house
mouse)
Length = 79
Score = 113 bits (57), Expect = 3e-25
Identities = 69/73 (94%)
Strand = Plus / Plus
Query: 1 acttgaagagaggctggccgtgatgaattcgattcatcaaagcgagtcatacacggctct 60
||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 4 acttggagagaggctggccgtgatgaattcgattcatctaaacgagtcatacacggctct 63
Query: 61 cctctcttttagt 73
|||||||| ||||
Sbjct: 64 cctctcttctagt 76
>RF00641;mir-154;AADA01084967.1/16706-16786 9598:Pan troglodytes
(chimpanzee)
Length = 81
Score = 87.7 bits (44), Expect = 2e-17
Identities = 60/64 (93%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 1 acttgaagagaggctggccgtgatgaattcgattcatcaaag-cgagtcatacacggctc 59
||||| ||||||||||||||||||||||||||||| |||||| |||||||||| ||||||
Sbjct: 4 acttggagagaggctggccgtgatgaattcgattcgtcaaagtcgagtcatactcggctc 63
Query: 60 tcct 63
||||
Sbjct: 64 tcct 67
>RF00641;mir-154;AANN01387448.1/1462-1384 9365:Erinaceus europaeus
(western European hedgehog)
Length = 79
Score = 85.7 bits (43), Expect = 7e-17
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 7 agagaggctggccgtgatgaattcgattcatcaaagcgagtcatacacggctctcctctc 66
||||||| |||||||||||||||||| | |||||||||||||||| |||||||||||||
Sbjct: 10 agagaggacggccgtgatgaattcgatccctcaaagcgagtcatacgcggctctcctctc 69
Query: 67 ttt 69
|||
Sbjct: 70 ttt 72
>RF00641;mir-154;AAGW01206555.1/4060-4141 9986:Oryctolagus
cuniculus (rabbit)
Length = 82
Score = 83.8 bits (42), Expect = 3e-16
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 28 ttcgattcatcaaagcgagtcatacacggctctcctctcttttagt 73
||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 34 ttcgattcatcaaagcgagtcatacacggctctcctctcttctagt 79
>RF00641;mir-154;AAQQ01350203.1/713-790 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 78
Score = 58.0 bits (29), Expect = 2e-08
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 17 gccgtgatgaattcgattcatcaaagcgagtcatacacggctctcctctcttttagt 73
|||| |||||||||| |||||| ||| ||||| |||| | |||||||||||||||||
Sbjct: 19 gccgcgatgaattcggttcatccaagtgagtcctacatgactctcctctcttttagt 75
>RF00641;mir-154;AAKN02051949.1/123833-123911 10141:Cavia
porcellus (domestic guinea pig)
Length = 79
Score = 54.0 bits (27), Expect = 2e-07
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 1 acttgaagagaggctggccgtgatgaattcgattcatcaaagcgagtcatacacggctct 60
||||| |||| ||||||| ||||| | || ||| |||||||| || |||||||||||| |
Sbjct: 4 acttggagaggggctggctgtgatcagtttgatccatcaaagtgactcatacacggctgt 63
Query: 61 cctctct 67
|||||||
Sbjct: 64 cctctct 70
