miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00784;mir-486;ABRQ01339403.1/10021-10088 9813:Procavia capensis
(cape rock hyrax)
Length = 68
Score = 123 bits (62), Expect = 3e-28
Identities = 65/66 (98%)
Strand = Plus / Plus
Query: 1 ggatcctgtactgagctgccccgaggcccttcactgtgcccagctcggggcagctcagta 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1 ggatcctgtactgagctgccccgaggccctgcactgtgcccagctcggggcagctcagta 60
Query: 61 caggat 66
||||||
Sbjct: 61 caggat 66
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 44 ctcggggcagctcagtacaggat 66
|||||||||||||||||||||||
Sbjct: 25 ctcggggcagctcagtacaggat 3
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 3 atcctgtactgagctgccccgag 25
|||||||||||||||||||||||
Sbjct: 66 atcctgtactgagctgccccgag 44
>RF00784;mir-486;ABRN01443338.1/12785-12852 9739:Tursiops
truncatus (bottlenosed dolphin)
Length = 68
Score = 99.6 bits (50), Expect = 4e-21
Identities = 56/58 (96%)
Strand = Plus / Plus
Query: 4 tcctgtactgagctgccccgaggcccttcactgtgcccagctcggggcagctcagtac 61
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 4 tcctgtactgagctgccccgaggcccttcgctgtgcccagctcgggccagctcagtac 61
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 44 ctcggggcagctcagtacagga 65
||||||||||||||||||||||
Sbjct: 25 ctcggggcagctcagtacagga 4
>RF00784;mir-486;AADA01053888.1/632-565 9598:Pan troglodytes
(chimpanzee)
Length = 68
Score = 95.6 bits (48), Expect = 6e-20
Identities = 60/64 (93%)
Strand = Plus / Plus
Query: 3 atcctgtactgagctgccccgaggcccttcactgtgcccagctcggggcagctcagtaca 62
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 3 atcctgtactgagctgccccgaggcccttcatgctgcccagcttggggcagctcagtaca 62
Query: 63 ggat 66
||||
Sbjct: 63 ggat 66
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 44 ctcggggcagctcagtacaggat 66
|||||||||||||||||||||||
Sbjct: 25 ctcggggcagctcagtacaggat 3
>RF00784;mir-486;ABRT010741278.1/1111-1044 9478:Tarsius syrichta
(Philippine tarsier)
Length = 68
Score = 93.7 bits (47), Expect = 2e-19
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 1 ggatcctgtactgagctgccccgaggcccttcactgtgcccagctcggggcagctcagt 59
||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||
Sbjct: 1 ggatcctgtactgagctgccccgaggcccgtcattgtgccccgctcggggcagctcagt 59
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 44 ctcggggcagctcagtacaggat 66
|||||||||||||||||||||||
Sbjct: 25 ctcggggcagctcagtacaggat 3
>RF00784;mir-486;AALT01613538.1/133-200 42254:Sorex araneus
(European shrew)
Length = 68
Score = 83.8 bits (42), Expect = 2e-16
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 1 ggatcctgtactgagctgccccgaggcccttcactgtgcccagctcggggcagctcagta 60
||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||
Sbjct: 1 ggatcctgtactgagctgccccgaggccctttcttgtgccccactaggggcagctcagta 60
Query: 61 caggat 66
||||||
Sbjct: 61 caggat 66
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 44 ctcggggcagctcagtacaggat 66
|||||||||||||||||||||||
Sbjct: 25 ctcggggcagctcagtacaggat 3
>RF00784;mir-486;AAPE01263359.1/646-579 59463:Myotis lucifugus
(little brown bat)
Length = 68
Score = 83.8 bits (42), Expect = 2e-16
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 1 ggatcctgtactgagctgccccgaggcccttcactgtgcccagctcggggcagctcagta 60
|||||||||||||||||||||||||| ||||| || ||| ||||||||||||||||||
Sbjct: 1 ggatcctgtactgagctgccccgaggttcttcattgcacccggctcggggcagctcagta 60
Query: 61 caggat 66
||||||
Sbjct: 61 caggat 66
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 44 ctcggggcagctcagtacaggat 66
|||||||||||||||||||||||
Sbjct: 25 ctcggggcagctcagtacaggat 3
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 3 atcctgtactgagctgccccgag 25
|||||||||||||||||||||||
Sbjct: 66 atcctgtactgagctgccccgag 44
>RF00784;mir-486;AAYZ01062575.1/1218-1151 9978:Ochotona princeps
(American pika)
Length = 68
Score = 83.8 bits (42), Expect = 2e-16
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 1 ggatcctgtactgagctgccccgaggcccttcactgtgcccagctcggggcagctcagta 60
||||||||||||||||||||| |||| |||| ||||||||||||||||||||| ||||
Sbjct: 1 ggatcctgtactgagctgccctgaggtccttgcttgtgcccagctcggggcagcttagta 60
Query: 61 caggat 66
||||||
Sbjct: 61 caggat 66
>RF00784;mir-486;ABRO01243683.1/2112-2179 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 68
Score = 75.8 bits (38), Expect = 6e-14
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 1 ggatcctgtactgagctgccccgaggcccttcactgtgcccagctcggggcagctcagta 60
||||||||||||||||||||| ||||| |||| |||| ||| ||||||||| |||||||
Sbjct: 1 ggatcctgtactgagctgccctgaggctcttctttgtgtccaactcggggcaactcagta 60
Query: 61 caggat 66
||||||
Sbjct: 61 caggat 66
>RF00784;mir-486;ABDC01344599.1/5816-5751 30608:Microcebus murinus
(gray mouse lemur)
Length = 66
Score = 67.9 bits (34), Expect = 1e-11
Identities = 55/61 (90%), Gaps = 2/61 (3%)
Strand = Plus / Plus
Query: 4 tcctgtactgagctgccccgaggcccttcactgtgcccagctcggggcagctcagtacag 63
||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||
Sbjct: 4 tcctgtactgagctgccccgaggccctgta--ttgccccgctcggggcagctcagtacag 61
Query: 64 g 64
|
Sbjct: 62 g 62
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 44 ctcggggcagctcagtacagga 65
||||||||||||||||||||||
Sbjct: 25 ctcggggcagctcagtacagga 4
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 5 cctgtactgagctgccccgag 25
|||||||||||||||||||||
Sbjct: 62 cctgtactgagctgccccgag 42
