miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00698;mir-489;ABRN01117807.1/20359-20268 9739:Tursiops
truncatus (bottlenosed dolphin)
Length = 92
Score = 113 bits (57), Expect = 4e-25
Identities = 79/85 (92%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 1 gtggcagcttggtggtcgtatgtgtggcgccatttatttgacccctttaggagtgacatc 60
||||||||||||||||||||||||||||||||| || | || || |||||||||||||||
Sbjct: 3 gtggcagcttggtggtcgtatgtgtggcgccatctactggaacc-tttaggagtgacatc 61
Query: 61 acatatacggcggctaaactgctac 85
|||||||||| ||||||||||||||
Sbjct: 62 acatatacggtggctaaactgctac 86
>RF00698;mir-489;AAGW01691909.1/791-700 9986:Oryctolagus cuniculus
(rabbit)
Length = 92
Score = 105 bits (53), Expect = 9e-23
Identities = 78/85 (91%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 1 gtggcagcttggtggtcgtatgtgtggcgccatttatttgacccctttaggagtgacatc 60
||||||||||||||||||||||||||| |||||| | |||| || |||||| ||||||||
Sbjct: 3 gtggcagcttggtggtcgtatgtgtggtgccattcacttgaacc-tttaggggtgacatc 61
Query: 61 acatatacggcggctaaactgctac 85
|||||||||| ||||||||||||||
Sbjct: 62 acatatacggtggctaaactgctac 86
>RF00698;mir-489;ABRQ01031627.1/5609-5518 9813:Procavia capensis
(cape rock hyrax)
Length = 92
Score = 101 bits (51), Expect = 1e-21
Identities = 76/83 (91%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 1 gtggcagcttggtggtcgtatgtgtggcgccatttatttgacccctttaggagtgacatc 60
||||||||||||||||||||||||||||||||||| |||| | | ||| ||||||||||
Sbjct: 3 gtggcagcttggtggtcgtatgtgtggcgccatttgcttgaactc-ttatgagtgacatc 61
Query: 61 acatatacggcggctaaactgct 83
|||||||||| ||||||||||||
Sbjct: 62 acatatacggtggctaaactgct 84
>RF00698;mir-489;ABVD01342338.1/2688-2597 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 92
Score = 89.7 bits (45), Expect = 5e-18
Identities = 76/85 (89%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 1 gtggcagcttggtggtcgtatgtgtggcgccatttatttgacccctttaggagtgacatc 60
|||||||||||| ||||||||||||| ||||||| ||||||| | || ||||||||||
Sbjct: 3 gtggcagcttggcagtcgtatgtgtggtgccattttcttgaccc-tctatgagtgacatc 61
Query: 61 acatatacggcggctaaactgctac 85
|||||||||| ||||||||||||||
Sbjct: 62 acatatacggtggctaaactgctac 86
>RF00698;mir-489;AAQR01063642.1/2143-2052 30611:Otolemur garnettii
(small-eared galago)
Length = 92
Score = 81.8 bits (41), Expect = 1e-15
Identities = 75/85 (88%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 1 gtggcagcttggtggtcgtatgtgtggcgccatttatttgacccctttaggagtgacatc 60
||||||||||||| | |||||||||||||||||||| |||| |||||| |||||||||
Sbjct: 3 gtggcagcttggtagccgtatgtgtggcgccatttacttga-atctttagaagtgacatc 61
Query: 61 acatatacggcggctaaactgctac 85
|||| |||||| ||||| |||||||
Sbjct: 62 acatgtacggcagctaatctgctac 86
>RF00698;mir-489;AAWZ01021558.1/191255-191164 28377:Anolis
carolinensis (green anole)
Length = 92
Score = 56.0 bits (28), Expect = 7e-08
Identities = 65/76 (85%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 7 gcttggtggtcgtatgtgtggcgccatttatttgacccctttaggagtgacatcacatat 66
||||||||||||||||| || || |||||| ||| | |||||||||||||||| || |
Sbjct: 9 gcttggtggtcgtatgtatgacgtcatttacttgttct-tttaggagtgacatcatatgt 67
Query: 67 acggcggctaaactgc 82
||||| ||||||||||
Sbjct: 68 acggctgctaaactgc 83
>RF00698;mir-489;ABDC01215275.1/2133-2041 30608:Microcebus murinus
(gray mouse lemur)
Length = 93
Score = 52.0 bits (26), Expect = 1e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 44 cctttaggagtgacatcacatatacggcggctaaactgctac 85
||||||| |||||||||||||||||||| |||| |||||||
Sbjct: 46 cctttagtagtgacatcacatatacggcaactaagctgctac 87
>RF00698;mir-489;BAAE01010852.1/933-843 8090:Oryzias latipes
(Japanese medaka)
Length = 91
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 50 ggagtgacatcacatatacggcggctaaactgctac 85
|||||||||||| || |||||| |||||||||||||
Sbjct: 50 ggagtgacatcatatgtacggctgctaaactgctac 85
