miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00792;mir-490;AANN01372443.1/381-254 9365:Erinaceus europaeus
(western European hedgehog)
Length = 128
Score = 129 bits (65), Expect = 5e-30
Identities = 68/69 (98%)
Strand = Plus / Plus
Query: 1 tcgacaccatggatctccaggtgggtcacgtttagagatacaccaacctggaggactcca 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 33 tcgacaccatggatctccaggtgggtcacgttttgagatacaccaacctggaggactcca 92
Query: 61 tgctgttga 69
|||||||||
Sbjct: 93 tgctgttga 101
>RF00792;mir-490;AC113246.15/27115-26988 10090:Mus musculus (house
mouse)
Length = 128
Score = 129 bits (65), Expect = 5e-30
Identities = 68/69 (98%)
Strand = Plus / Plus
Query: 1 tcgacaccatggatctccaggtgggtcacgtttagagatacaccaacctggaggactcca 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 33 tcgacaccatggatctccaggtgggtcacgtttagatatacaccaacctggaggactcca 92
Query: 61 tgctgttga 69
|||||||||
Sbjct: 93 tgctgttga 101
>RF00792;mir-490;AAYZ01127575.1/844-971 9978:Ochotona princeps
(American pika)
Length = 128
Score = 129 bits (65), Expect = 5e-30
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 5 caccatggatctccaggtgggtcacgtttagagatacaccaacctggaggactccatgct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37 caccatggatctccaggtgggtcacgtttagagatacaccaacctggaggactccatgct 96
Query: 65 gttga 69
|||||
Sbjct: 97 gttga 101
>RF00792;mir-490;AAQQ01772082.1/825-951 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 127
Score = 113 bits (57), Expect = 3e-25
Identities = 66/69 (95%)
Strand = Plus / Plus
Query: 1 tcgacaccatggatctccaggtgggtcacgtttagagatacaccaacctggaggactcca 60
||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 32 tcgacaccatggatctccaggtgggtcacgtttagaggttaaccaacctggaggactcca 91
Query: 61 tgctgttga 69
|||||||||
Sbjct: 92 tgctgttga 100
>RF00792;mir-490;ABRQ01197453.1/2148-2275 9813:Procavia capensis
(cape rock hyrax)
Length = 128
Score = 113 bits (57), Expect = 3e-25
Identities = 66/69 (95%)
Strand = Plus / Plus
Query: 1 tcgacaccatggatctccaggtgggtcacgtttagagatacaccaacctggaggactcca 60
|||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||
Sbjct: 33 tcgacaccatggatctccaggtgggtcacggttacaggtacaccaacctggaggactcca 92
Query: 61 tgctgttga 69
|||||||||
Sbjct: 93 tgctgttga 101
>RF00792;mir-490;AAKN02015558.1/78118-77991 10141:Cavia porcellus
(domestic guinea pig)
Length = 128
Score = 107 bits (54), Expect = 2e-23
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 5 caccatggatctccaggtgggtcacgtttagagatacaccaacctggaggactccatgct 64
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 37 caccatggatctccaggtgggtcacggttagaaatacaccaacctggaggactccatgct 96
Query: 65 gt 66
||
Sbjct: 97 gt 98
>RF00792;mir-490;AADN02006399.1/20529-20400 9031:Gallus gallus
(chicken)
Length = 130
Score = 103 bits (52), Expect = 3e-22
Identities = 67/71 (94%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 1 tcgacaccatggatctccaggtgggtcacgttta--gagatacaccaacctggaggactc 58
|||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||
Sbjct: 33 tcgacaccatggatctccaggtgggtcaagattatagagatacaccaacctggaggactc 92
Query: 59 catgctgttga 69
|||||||||||
Sbjct: 93 catgctgttga 103
>RF00792;mir-490;AAPN01246488.1/31456-31583 9258:Ornithorhynchus
anatinus (platypus)
Length = 128
Score = 91.7 bits (46), Expect = 1e-18
Identities = 61/66 (92%)
Strand = Plus / Plus
Query: 1 tcgacaccatggatctccaggtgggtcacgtttagagatacaccaacctggaggactcca 60
||||| |||||||||||||||||||||| | ||||||| ||||||||||||||||||||
Sbjct: 33 tcgacgccatggatctccaggtgggtcaaggttagagacgcaccaacctggaggactcca 92
Query: 61 tgctgt 66
||||||
Sbjct: 93 tgctgt 98
>RF00792;mir-490;AAWZ01012016.1/49356-49227 28377:Anolis
carolinensis (green anole)
Length = 130
Score = 89.7 bits (45), Expect = 4e-18
Identities = 63/68 (92%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 4 acaccatggatctccaggtgggtcacgttta--gagatacaccaacctggaggactccat 61
||||||||||||||||||||||||| | ||| |||| ||||||||||||||||||||||
Sbjct: 36 acaccatggatctccaggtgggtcaagattatagagaaacaccaacctggaggactccat 95
Query: 62 gctgttga 69
||||||||
Sbjct: 96 gctgttga 103
>RF00792;mir-490;ABQO010519113.1/1706-1579 9315:Macropus eugenii
(tammar wallaby)
Length = 128
Score = 81.8 bits (41), Expect = 1e-15
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 1 tcgacaccatggatctccaggtgggtcacgtttagagatacaccaacctggaggactcca 60
|||||||||||||||||||||| ||||| | ||||| || |||||||||||| ||||||
Sbjct: 33 tcgacaccatggatctccaggtaggtcaaggttagaaatgtaccaacctggagtactcca 92
Query: 61 tgctgttga 69
|||||||||
Sbjct: 93 tgctgttga 101
>RF00792;mir-490;AAFR03031771.1/89803-89676 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 128
Score = 67.9 bits (34), Expect = 1e-11
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 8 catggatctccaggtgggtcacgtttagagatacaccaacctggaggactccatgctgtt 67
|||||||||| ||||||||| |||||| ||| ||||||||||||||||||| ||||||
Sbjct: 40 catggatctcttggtgggtcaagtttaggaatataccaacctggaggactccaagctgtt 99
Query: 68 ga 69
||
Sbjct: 100 ga 101
>RF00792;mir-490;ABRP01133569.1/2630-2749 132908:Pteropus vampyrus
(large flying fox)
Length = 120
Score = 67.9 bits (34), Expect = 1e-11
Identities = 44/46 (95%), Gaps = 1/46 (2%)
Strand = Plus / Plus
Query: 21 gtgggtcacgtttagagatacaccaacctggaggactccatgctgt 66
||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 47 gtgggtcacgttt-gagatacaccaacctggaggactgcatgctgt 91
