miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00862;mir-491;AAKN02025646.1/25933-25850 10141:Cavia porcellus
(domestic guinea pig)
Length = 84
Score = 127 bits (64), Expect = 2e-29
Identities = 79/84 (94%)
Strand = Plus / Plus
Query: 1 ttgacttagctgggtagtggggaacccttccatgaggagtagaacactccttatgcaaga 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1 ttgacttagctgggcagtggggaacccttccatgaggagtagaacactccttatgtaaga 60
Query: 61 ttcccttctacctgactgggttgg 84
||||| ||| |||| |||||||||
Sbjct: 61 ttcccctctgcctggctgggttgg 84
>RF00862;mir-491;ABRO01065492.1/742-825 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 84
Score = 125 bits (63), Expect = 9e-29
Identities = 78/83 (93%)
Strand = Plus / Plus
Query: 2 tgacttagctgggtagtggggaacccttccatgaggagtagaacactccttatgcaagat 61
|||||||||||| | ||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 2 tgacttagctggatggtggggaacccttccatgaggagaataacactccttatgcaagat 61
Query: 62 tcccttctacctgactgggttgg 84
||||||| |||||||||||||||
Sbjct: 62 tcccttccacctgactgggttgg 84
>RF00862;mir-491;CR937052.2/62844-62927 10116:Rattus norvegicus
(Norway rat)
Length = 84
Score = 117 bits (59), Expect = 2e-26
Identities = 77/83 (92%)
Strand = Plus / Plus
Query: 1 ttgacttagctgggtagtggggaacccttccatgaggagtagaacactccttatgcaaga 60
|||||||||||||| |||||||||| ||||| ||||||||||| |||||||||||| |||
Sbjct: 1 ttgacttagctgggaagtggggaacacttccgtgaggagtagagcactccttatgccaga 60
Query: 61 ttcccttctacctgactgggttg 83
|||||||||||||| ||||||||
Sbjct: 61 ttcccttctacctggctgggttg 83
>RF00862;mir-491;ABRQ01242560.1/797-877 9813:Procavia capensis
(cape rock hyrax)
Length = 81
Score = 105 bits (53), Expect = 9e-23
Identities = 77/81 (95%), Gaps = 3/81 (3%)
Strand = Plus / Plus
Query: 2 tgacttagctgggtagtggggaacccttccatgaggagtagaacactccttatgcaagat 61
||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||
Sbjct: 2 tgacttagctgggtagtggggaa-ccttccatgaggagtcgaacact-cttatgcaagat 59
Query: 62 tcccttctacctgactgggtt 82
| |||||||||||||||||||
Sbjct: 60 t-ccttctacctgactgggtt 79
>RF00862;mir-491;AAIY01312167.1/1228-1146 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 83
Score = 50.1 bits (25), Expect = 4e-06
Identities = 68/81 (83%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 1 ttgacttagctgggtagtggggaacccttccatgaggagtagaacactccttatgcaaga 60
|||| |||||| |||||||||||||| | ||| ||||||||||||| ||||| ||
Sbjct: 1 ttgatttagctaggtagtggggaaccttcccacaaggagtagaacacatgttatgtaa-c 59
Query: 61 ttcccttctacctgactgggt 81
| |||||||||||||||||||
Sbjct: 60 tgcccttctacctgactgggt 80
