miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00989;mir-492;AAWR02012659.1/1816-1919 9796:Equus caballus
(horse)
Length = 104
Score = 99.6 bits (50), Expect = 4e-21
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 17 agattcttggggccaccattgagaactccaagattgttctgcagatcgac 66
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33 agattcttggggccaccattgagaactccaagattgttctgcagatcgac 82
>RF00989;mir-492;DQ289548.1/23-138 9534:Chlorocebus aethiops
(African green monkey)
Length = 116
Score = 91.7 bits (46), Expect = 1e-18
Identities = 61/66 (92%)
Strand = Plus / Plus
Query: 1 gaggagctgcgggacaagattcttggggccaccattgagaactccaagattgttctgcag 60
||||| |||||||||||||||||||| ||||||||||||||||||| |||||| || |||
Sbjct: 29 gaggacctgcgggacaagattcttggtgccaccattgagaactccaggattgtcctacag 88
Query: 61 atcgac 66
||||||
Sbjct: 89 atcgac 94
>RF00989;mir-492;BC116088.1/417-532 9913:Bos taurus (cattle)
Length = 116
Score = 83.8 bits (42), Expect = 2e-16
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 1 gaggagctgcgggacaagattcttggggccaccattgagaactccaagattgttctgcag 60
||||| ||||||||| ||||||| || ||||||||||||||||||||||| || ||||||
Sbjct: 29 gaggacctgcgggaccagattctcggtgccaccattgagaactccaagatagtcctgcag 88
Query: 61 atcgac 66
||||||
Sbjct: 89 atcgac 94
>RF00989;mir-492;AANG01593139.1/635-750 9685:Felis catus (domestic
cat)
Length = 116
Score = 81.8 bits (41), Expect = 9e-16
Identities = 56/61 (91%)
Strand = Plus / Plus
Query: 2 aggagctgcgggacaagattcttggggccaccattgagaactccaagattgttctgcaga 61
||||||||| |||||||||||||| |||||||||| || ||||||||||||| |||||||
Sbjct: 30 aggagctgcaggacaagattcttgtggccaccattaagcactccaagattgtcctgcaga 89
Query: 62 t 62
|
Sbjct: 90 t 90
>RF00989;mir-492;AK293479.1/1021-1129 9606:Homo sapiens (human)
Length = 109
Score = 79.8 bits (40), Expect = 4e-15
Identities = 49/52 (94%)
Strand = Plus / Plus
Query: 15 caagattcttggggccaccattgagaactccaagattgttctgcagatcgac 66
|||||||||||| ||||||||||||||||||| |||||| ||||||||||||
Sbjct: 36 caagattcttggtgccaccattgagaactccaggattgtcctgcagatcgac 87
>RF00989;mir-492;AAFR03029977.1/23736-23627 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 110
Score = 77.8 bits (39), Expect = 1e-14
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 17 agattcttggggccaccattgagaactccaagattgttctgca 59
|||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 39 agattcttggtgccaccattgagaactccaagattgttctgca 81
>RF00989;mir-492;AAPE01612399.1/572-457 59463:Myotis lucifugus
(little brown bat)
Length = 116
Score = 77.8 bits (39), Expect = 1e-14
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 11 gggacaagattcttggggccaccattgagaactccaagattgt 53
|||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 36 gggacaagattcttggtgccaccattgagaactccaagattgt 78
>RF00989;mir-492;ABQO010770433.1/3408-3523 9315:Macropus eugenii
(tammar wallaby)
Length = 116
Score = 75.8 bits (38), Expect = 6e-14
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 2 aggagctgcgggacaagattcttggggccaccattgagaactccaagattgttctgca 59
|||| ||||| || ||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 30 aggacctgcgagataagattcttggtgccaccattgagaactcaaagattgttctgca 87
>RF00989;mir-492;AAPE01406844.1/331-217 59463:Myotis lucifugus
(little brown bat)
Length = 115
Score = 75.8 bits (38), Expect = 6e-14
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 13 gacaagattcttggggccaccattgagaactccaagattgttctgcagat 62
|||||||||||||| ||||||| |||||||||||||||||| ||||||||
Sbjct: 41 gacaagattcttggtgccaccactgagaactccaagattgtcctgcagat 90
>RF00989;mir-492;ABRR01691342.1/715-830 30538:Lama pacos (alpaca)
Length = 116
Score = 75.8 bits (38), Expect = 6e-14
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 1 gaggagctgcgggacaagattcttggggccaccattgagaactccaagattgttctgcag 60
||||| |||||||||||||||| ||| |||||| |||||||||||||| | || ||||||
Sbjct: 29 gaggacctgcgggacaagattcctggtgccaccgttgagaactccaaggtagtcctgcag 88
Query: 61 atcgac 66
||||||
Sbjct: 89 atcgac 94
>RF00989;mir-492;AAEX02035000.1/100189-100293 9615:Canis lupus
familiaris (dog)
Length = 105
Score = 75.8 bits (38), Expect = 6e-14
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 17 agattcttggggccaccattgagaactccaagattgttctgcagat 62
|||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 34 agattcttggtgccaccattgagaactccaagattgtcctgcagat 79
>RF00989;mir-492;ABRT011117050.1/626-739 9478:Tarsius syrichta
(Philippine tarsier)
Length = 114
Score = 75.8 bits (38), Expect = 6e-14
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 1 gaggagctgcgggacaagattcttggggccaccattgagaactccaagattgttctgcag 60
||||| |||||||||||||||||| ||||||| || ||||||||||||| | | ||||||
Sbjct: 27 gaggacctgcgggacaagattcttagggccacgatggagaactccaagactctcctgcag 86
Query: 61 atcgac 66
||||||
Sbjct: 87 atcgac 92
>RF00989;mir-492;AANU01103906.1/13315-13213 9544:Macaca mulatta
(rhesus monkey)
Length = 103
Score = 75.8 bits (38), Expect = 6e-14
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 17 agattcttggggccaccattgagaactccaagattgttctgcagatcgac 66
|||||||||| ||||||||||||||||||| |||||| ||||||||||||
Sbjct: 32 agattcttggtgccaccattgagaactccaggattgtcctgcagatcgac 81
>RF00989;mir-492;AAKN02042410.1/84126-84020 10141:Cavia porcellus
(domestic guinea pig)
Length = 107
Score = 73.8 bits (37), Expect = 2e-13
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 17 agattcttggggccaccattgagaactccaagattgttctgcagatcga 65
|||||||||| |||||||| ||||||||||||||||| |||||||||||
Sbjct: 36 agattcttggagccaccatcgagaactccaagattgtcctgcagatcga 84
>RF00989;mir-492;ABQO010845438.1/950-1054 9315:Macropus eugenii
(tammar wallaby)
Length = 105
Score = 69.9 bits (35), Expect = 4e-12
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 17 agattcttggggccaccattgagaactccaagattgttctgca 59
|||||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 34 agattcttggtgccaccattgagaactcaaagattgttctgca 76
>RF00989;mir-492;AANU01270091.1/20339-20224 9544:Macaca mulatta
(rhesus monkey)
Length = 116
Score = 69.9 bits (35), Expect = 4e-12
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 1 gaggagctgcgggacaagattcttggggccaccattgagaactccaagattgttctgcag 60
||||| |||||||||||||||||||| ||| || ||||||||||| |||||| ||||||
Sbjct: 29 gaggacctgcgggacaagattcttggtgccgtcaatgagaactccaggattgtcctgcag 88
Query: 61 atc 63
|||
Sbjct: 89 atc 91
>RF00989;mir-492;BC085304.1/444-559 10090:Mus musculus (house
mouse)
Length = 116
Score = 69.9 bits (35), Expect = 4e-12
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 8 tgcgggacaagattcttggggccaccattgagaactccaagattgttctgcagat 62
|||| |||||||||||||| ||||||||||| |||||||||||||| || |||||
Sbjct: 36 tgcgcgacaagattcttggtgccaccattgacaactccaagattgtcctacagat 90
>RF00989;mir-492;AAFC03004241.1/51024-50920 9913:Bos taurus
(cattle)
Length = 105
Score = 67.9 bits (34), Expect = 1e-11
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 17 agattcttggggccaccattgagaactccaagattgttctgcagatcgac 66
||||||| || ||||||||||||||||||||||| || ||||||||||||
Sbjct: 34 agattctcggtgccaccattgagaactccaagatagtcctgcagatcgac 83
>RF00989;mir-492;AAPY01741560.1/1272-1376 37347:Tupaia belangeri
(northern tree shrew)
Length = 105
Score = 67.9 bits (34), Expect = 1e-11
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 17 agattcttggggccaccattgagaactccaagattgttctgcagat 62
||||||| || |||||||||||||||||||||||||| ||||||||
Sbjct: 34 agattctcggtgccaccattgagaactccaagattgtcctgcagat 79
>RF00989;mir-492;AAQQ01698235.1/837-940 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 104
Score = 67.9 bits (34), Expect = 1e-11
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 17 agattcttggggccaccattgagaactccaagattgttctgcagat 62
||||||| || |||||||||||||||||||||||||| ||||||||
Sbjct: 33 agattctcggtgccaccattgagaactccaagattgtcctgcagat 78
>RF00989;mir-492;ABRO01186058.1/940-1045 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 106
Score = 67.9 bits (34), Expect = 1e-11
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 17 agattcttggggccaccattgagaactccaagattgttctgcagatcgac 66
|||||| ||| ||||||||||||||||||| |||||| ||||||||||||
Sbjct: 35 agattcatggtgccaccattgagaactccaggattgtcctgcagatcgac 84
>RF00989;mir-492;AANU01254493.1/3621-3740 9544:Macaca mulatta
(rhesus monkey)
Length = 120
Score = 63.9 bits (32), Expect = 2e-10
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 7 ctgcgggacaagattcttggggccaccattgagaactccaagattgttctgcagat 62
||||||||||||| |||||| | ||||||||||||||||| |||||| |||||||
Sbjct: 35 ctgcgggacaagagtcttggagtcaccattgagaactccaggattgtcttgcagat 90
>RF00989;mir-492;AAYZ01143552.1/22927-22812 9978:Ochotona princeps
(American pika)
Length = 116
Score = 61.9 bits (31), Expect = 9e-10
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 16 aagattcttggggccaccattgagaactccaagattgttctgcagatcgac 66
||||||| |||||||||||||| ||||||||||| || ||||||||||||
Sbjct: 44 aagattcacggggccaccattgacaactccaagatcgtcctgcagatcgac 94
>RF00989;mir-492;ABRP01063110.1/10600-10719 132908:Pteropus
vampyrus (large flying fox)
Length = 120
Score = 60.0 bits (30), Expect = 3e-09
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 17 agattcttggggccaccattgagaactccaagattgttctgcagat 62
|||| ||||| |||||||| ||||||||||||||||| ||||||||
Sbjct: 49 agatacttggtgccaccatcgagaactccaagattgtcctgcagat 94
>RF00989;mir-492;AL590873.17/39528-39424 10090:Mus musculus (house
mouse)
Length = 105
Score = 60.0 bits (30), Expect = 3e-09
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 17 agattcttggggccaccattgagaactccaagattgttctgcagat 62
|||||||||| ||||||||||| |||||||||||||| || |||||
Sbjct: 34 agattcttggtgccaccattgacaactccaagattgtcctacagat 79
>RF00989;mir-492;AAYZ01059725.1/7706-7594 9978:Ochotona princeps
(American pika)
Length = 113
Score = 60.0 bits (30), Expect = 3e-09
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 25 ggggccaccattgagaactccaagattgttctgcagatcgac 66
|||||||||||||| ||||||||||| || ||||||||||||
Sbjct: 50 ggggccaccattgacaactccaagatcgtcctgcagatcgac 91
>RF00989;mir-492;ABRT010595294.1/1639-1525 9478:Tarsius syrichta
(Philippine tarsier)
Length = 115
Score = 56.0 bits (28), Expect = 5e-08
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 1 gaggagctgcgggacaagattcttggggccaccattgagaactccaagattgttctgcag 60
||||| ||| |||||||||||||| | ||||||| ||||| ||||||||||| ||||||
Sbjct: 28 gaggacctgtgggacaagattcttagtaccaccatcgagaattccaagattgtcctgcag 87
>RF00989;mir-492;ABVD01338081.1/3139-3033 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 107
Score = 54.0 bits (27), Expect = 2e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 12 ggacaagattcttggggccaccattgagaactccaagat 50
|||||||||| |||| ||||||| |||||||||||||||
Sbjct: 40 ggacaagatttttggtgccaccactgagaactccaagat 78
>RF00989;mir-492;AANN01518369.1/2728-2624 9365:Erinaceus europaeus
(western European hedgehog)
Length = 105
Score = 54.0 bits (27), Expect = 2e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 28 gccaccattgagaactccaagattgttctgcagat 62
||||||||||||||||||||| |||| ||||||||
Sbjct: 45 gccaccattgagaactccaaggttgtcctgcagat 79
>RF00989;mir-492;ACBE01147133.1/1104-988 9685:Felis catus
(domestic cat)
Length = 117
Score = 54.0 bits (27), Expect = 2e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 2 aggagctgcgggacaagattcttggggccaccattgagaactc 44
|||| |||| ||||||||||||||| || ||||||||||||||
Sbjct: 30 aggacctgcaggacaagattcttggtgctaccattgagaactc 72
>RF00989;mir-492;ABRN01092265.1/19335-19439 9739:Tursiops
truncatus (bottlenosed dolphin)
Length = 105
Score = 52.0 bits (26), Expect = 8e-07
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 17 agattcttggggccaccattgagaactccaagattgttctgcagatcgac 66
|||||||||| |||||| ||||||| |||| ||| || ||||||||||||
Sbjct: 34 agattcttggtgccaccgttgagaattccaggatggtcctgcagatcgac 83
>RF00989;mir-492;AANG01542985.1/2319-2440 9685:Felis catus
(domestic cat)
Length = 122
Score = 52.0 bits (26), Expect = 8e-07
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 17 agattcttggggccaccattgagaactccaagattgttctgcagat 62
||||||| || |||||||| |||||||||||||| || ||||||||
Sbjct: 51 agattctcggtgccaccatcgagaactccaagatcgtcctgcagat 96
>RF00989;mir-492;AAIY01323094.1/901-786 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 116
Score = 52.0 bits (26), Expect = 8e-07
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 1 gaggagctgcgggacaagattcttggggccaccattgagaactccaagattgttctgcag 60
||||| |||||| || ||||||| || |||||||| ||||||||||| | || ||||||
Sbjct: 29 gaggacctgcggcaccagattctcggtgccaccatccagaactccaaggtcgtgctgcag 88
Query: 61 atcgac 66
||||||
Sbjct: 89 atcgac 94
>RF00989;mir-492;AAGW01537790.1/3268-3161 9986:Oryctolagus
cuniculus (rabbit)
Length = 108
Score = 50.1 bits (25), Expect = 3e-06
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 11 gggacaagattcttggggccaccattgagaactccaagattgttctgcagatc 63
||||| |||||||||| ||||||||||||||| ||| ||| || |||| ||||
Sbjct: 34 gggaccagattcttggtgccaccattgagaaccccaggatggtcctgctgatc 86
>RF00989;mir-492;ABQO010341125.1/2372-2257 9315:Macropus eugenii
(tammar wallaby)
Length = 116
Score = 48.1 bits (24), Expect = 1e-05
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 16 aagattcttggggccaccattgagaactccaagattgttctgca 59
||||||||||| ||| |||| |||||||| || |||||||||||
Sbjct: 44 aagattcttggtgcctccatcgagaactcaaatattgttctgca 87
>RF00989;mir-492;AAGW01569198.1/3881-3995 9986:Oryctolagus
cuniculus (rabbit)
Length = 115
Score = 44.1 bits (22), Expect = 2e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 12 ggacaagattcttggggccaccattgagaactcc 45
||||| ||||||||| ||||| ||||||||||||
Sbjct: 42 ggacatgattcttggtgccacgattgagaactcc 75
>RF00989;mir-492;AAIY01549221.1/3664-3552 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 113
Score = 44.1 bits (22), Expect = 2e-04
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 17 agattcttggggccaccattgagaactccaagattgttctgcagatcgac 66
||||||| || |||||||| ||||||||||| | || ||||||||||||
Sbjct: 42 agattctcggtgccaccatccagaactccaaggtcgtgctgcagatcgac 91
>RF00989;mir-492;CAAA01050617.1/3040-3154 10090:Mus musculus
(house mouse)
Length = 115
Score = 42.1 bits (21), Expect = 8e-04
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 15 caagattcttggggccaccattgagaactccaagattgttctgca 59
|||||||||||| |||||||||| |||| | | || |||||||||
Sbjct: 42 caagattcttggtgccaccattgggaaccctaggactgttctgca 86
