miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00989;mir-492;AAWR02012659.1/1816-1919 9796:Equus caballus
(horse)
Length = 104
Score = 93.7 bits (47), Expect = 2e-19
Identities = 47/47 (100%)
Strand = Plus / Plus
Query: 16 agattcttggggccaccattgagaactccaagattgttctgcagatc 62
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33 agattcttggggccaccattgagaactccaagattgttctgcagatc 79
>RF00989;mir-492;DQ289548.1/23-138 9534:Chlorocebus aethiops
(African green monkey)
Length = 116
Score = 83.8 bits (42), Expect = 2e-16
Identities = 57/62 (91%)
Strand = Plus / Plus
Query: 1 aggagctgcgggacaagattcttggggccaccattgagaactccaagattgttctgcaga 60
|||| |||||||||||||||||||| ||||||||||||||||||| |||||| || ||||
Sbjct: 30 aggacctgcgggacaagattcttggtgccaccattgagaactccaggattgtcctacaga 89
Query: 61 tc 62
||
Sbjct: 90 tc 91
>RF00989;mir-492;AANG01593139.1/635-750 9685:Felis catus (domestic
cat)
Length = 116
Score = 81.8 bits (41), Expect = 9e-16
Identities = 56/61 (91%)
Strand = Plus / Plus
Query: 1 aggagctgcgggacaagattcttggggccaccattgagaactccaagattgttctgcaga 60
||||||||| |||||||||||||| |||||||||| || ||||||||||||| |||||||
Sbjct: 30 aggagctgcaggacaagattcttgtggccaccattaagcactccaagattgtcctgcaga 89
Query: 61 t 61
|
Sbjct: 90 t 90
>RF00989;mir-492;AAFR03029977.1/23736-23627 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 110
Score = 77.8 bits (39), Expect = 1e-14
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 16 agattcttggggccaccattgagaactccaagattgttctgca 58
|||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 39 agattcttggtgccaccattgagaactccaagattgttctgca 81
>RF00989;mir-492;AAPE01612399.1/572-457 59463:Myotis lucifugus
(little brown bat)
Length = 116
Score = 77.8 bits (39), Expect = 1e-14
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 10 gggacaagattcttggggccaccattgagaactccaagattgt 52
|||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 36 gggacaagattcttggtgccaccattgagaactccaagattgt 78
>RF00989;mir-492;ABQO010770433.1/3408-3523 9315:Macropus eugenii
(tammar wallaby)
Length = 116
Score = 75.8 bits (38), Expect = 5e-14
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 1 aggagctgcgggacaagattcttggggccaccattgagaactccaagattgttctgca 58
|||| ||||| || ||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 30 aggacctgcgagataagattcttggtgccaccattgagaactcaaagattgttctgca 87
>RF00989;mir-492;AAPE01406844.1/331-217 59463:Myotis lucifugus
(little brown bat)
Length = 115
Score = 75.8 bits (38), Expect = 5e-14
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 12 gacaagattcttggggccaccattgagaactccaagattgttctgcagat 61
|||||||||||||| ||||||| |||||||||||||||||| ||||||||
Sbjct: 41 gacaagattcttggtgccaccactgagaactccaagattgtcctgcagat 90
>RF00989;mir-492;BC116088.1/417-532 9913:Bos taurus (cattle)
Length = 116
Score = 75.8 bits (38), Expect = 5e-14
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 1 aggagctgcgggacaagattcttggggccaccattgagaactccaagattgttctgcaga 60
|||| ||||||||| ||||||| || ||||||||||||||||||||||| || |||||||
Sbjct: 30 aggacctgcgggaccagattctcggtgccaccattgagaactccaagatagtcctgcaga 89
Query: 61 tc 62
||
Sbjct: 90 tc 91
>RF00989;mir-492;AAEX02035000.1/100189-100293 9615:Canis lupus
familiaris (dog)
Length = 105
Score = 75.8 bits (38), Expect = 5e-14
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 16 agattcttggggccaccattgagaactccaagattgttctgcagat 61
|||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 34 agattcttggtgccaccattgagaactccaagattgtcctgcagat 79
>RF00989;mir-492;AK293479.1/1021-1129 9606:Homo sapiens (human)
Length = 109
Score = 73.8 bits (37), Expect = 2e-13
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 14 caagattcttggggccaccattgagaactccaagattgttctgcagatc 62
|||||||||||| ||||||||||||||||||| |||||| |||||||||
Sbjct: 36 caagattcttggtgccaccattgagaactccaggattgtcctgcagatc 84
>RF00989;mir-492;ABQO010845438.1/950-1054 9315:Macropus eugenii
(tammar wallaby)
Length = 105
Score = 69.9 bits (35), Expect = 3e-12
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 16 agattcttggggccaccattgagaactccaagattgttctgca 58
|||||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 34 agattcttggtgccaccattgagaactcaaagattgttctgca 76
>RF00989;mir-492;AANU01103906.1/13315-13213 9544:Macaca mulatta
(rhesus monkey)
Length = 103
Score = 69.9 bits (35), Expect = 3e-12
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 16 agattcttggggccaccattgagaactccaagattgttctgcagatc 62
|||||||||| ||||||||||||||||||| |||||| |||||||||
Sbjct: 32 agattcttggtgccaccattgagaactccaggattgtcctgcagatc 78
>RF00989;mir-492;BC085304.1/444-559 10090:Mus musculus (house
mouse)
Length = 116
Score = 69.9 bits (35), Expect = 3e-12
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 7 tgcgggacaagattcttggggccaccattgagaactccaagattgttctgcagat 61
|||| |||||||||||||| ||||||||||| |||||||||||||| || |||||
Sbjct: 36 tgcgcgacaagattcttggtgccaccattgacaactccaagattgtcctacagat 90
>RF00989;mir-492;AAKN02042410.1/84126-84020 10141:Cavia porcellus
(domestic guinea pig)
Length = 107
Score = 69.9 bits (35), Expect = 3e-12
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 16 agattcttggggccaccattgagaactccaagattgttctgcagatc 62
|||||||||| |||||||| ||||||||||||||||| |||||||||
Sbjct: 36 agattcttggagccaccatcgagaactccaagattgtcctgcagatc 82
>RF00989;mir-492;ABRR01691342.1/715-830 30538:Lama pacos (alpaca)
Length = 116
Score = 67.9 bits (34), Expect = 1e-11
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 1 aggagctgcgggacaagattcttggggccaccattgagaactccaagattgttctgcaga 60
|||| |||||||||||||||| ||| |||||| |||||||||||||| | || |||||||
Sbjct: 30 aggacctgcgggacaagattcctggtgccaccgttgagaactccaaggtagtcctgcaga 89
Query: 61 tc 62
||
Sbjct: 90 tc 91
>RF00989;mir-492;AAPY01741560.1/1272-1376 37347:Tupaia belangeri
(northern tree shrew)
Length = 105
Score = 67.9 bits (34), Expect = 1e-11
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 16 agattcttggggccaccattgagaactccaagattgttctgcagat 61
||||||| || |||||||||||||||||||||||||| ||||||||
Sbjct: 34 agattctcggtgccaccattgagaactccaagattgtcctgcagat 79
>RF00989;mir-492;ABRT011117050.1/626-739 9478:Tarsius syrichta
(Philippine tarsier)
Length = 114
Score = 67.9 bits (34), Expect = 1e-11
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 1 aggagctgcgggacaagattcttggggccaccattgagaactccaagattgttctgcaga 60
|||| |||||||||||||||||| ||||||| || ||||||||||||| | | |||||||
Sbjct: 28 aggacctgcgggacaagattcttagggccacgatggagaactccaagactctcctgcaga 87
Query: 61 tc 62
||
Sbjct: 88 tc 89
>RF00989;mir-492;AANU01270091.1/20339-20224 9544:Macaca mulatta
(rhesus monkey)
Length = 116
Score = 67.9 bits (34), Expect = 1e-11
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 1 aggagctgcgggacaagattcttggggccaccattgagaactccaagattgttctgcaga 60
|||| |||||||||||||||||||| ||| || ||||||||||| |||||| |||||||
Sbjct: 30 aggacctgcgggacaagattcttggtgccgtcaatgagaactccaggattgtcctgcaga 89
Query: 61 tc 62
||
Sbjct: 90 tc 91
>RF00989;mir-492;AAQQ01698235.1/837-940 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 104
Score = 67.9 bits (34), Expect = 1e-11
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 16 agattcttggggccaccattgagaactccaagattgttctgcagat 61
||||||| || |||||||||||||||||||||||||| ||||||||
Sbjct: 33 agattctcggtgccaccattgagaactccaagattgtcctgcagat 78
>RF00989;mir-492;AANU01254493.1/3621-3740 9544:Macaca mulatta
(rhesus monkey)
Length = 120
Score = 63.9 bits (32), Expect = 2e-10
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 6 ctgcgggacaagattcttggggccaccattgagaactccaagattgttctgcagat 61
||||||||||||| |||||| | ||||||||||||||||| |||||| |||||||
Sbjct: 35 ctgcgggacaagagtcttggagtcaccattgagaactccaggattgtcttgcagat 90
>RF00989;mir-492;AAFC03004241.1/51024-50920 9913:Bos taurus
(cattle)
Length = 105
Score = 61.9 bits (31), Expect = 8e-10
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 16 agattcttggggccaccattgagaactccaagattgttctgcagatc 62
||||||| || ||||||||||||||||||||||| || |||||||||
Sbjct: 34 agattctcggtgccaccattgagaactccaagatagtcctgcagatc 80
>RF00989;mir-492;ABRO01186058.1/940-1045 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 106
Score = 61.9 bits (31), Expect = 8e-10
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 16 agattcttggggccaccattgagaactccaagattgttctgcagatc 62
|||||| ||| ||||||||||||||||||| |||||| |||||||||
Sbjct: 35 agattcatggtgccaccattgagaactccaggattgtcctgcagatc 81
>RF00989;mir-492;ABRP01063110.1/10600-10719 132908:Pteropus
vampyrus (large flying fox)
Length = 120
Score = 60.0 bits (30), Expect = 3e-09
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 16 agattcttggggccaccattgagaactccaagattgttctgcagat 61
|||| ||||| |||||||| ||||||||||||||||| ||||||||
Sbjct: 49 agatacttggtgccaccatcgagaactccaagattgtcctgcagat 94
>RF00989;mir-492;AL590873.17/39528-39424 10090:Mus musculus (house
mouse)
Length = 105
Score = 60.0 bits (30), Expect = 3e-09
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 16 agattcttggggccaccattgagaactccaagattgttctgcagat 61
|||||||||| ||||||||||| |||||||||||||| || |||||
Sbjct: 34 agattcttggtgccaccattgacaactccaagattgtcctacagat 79
>RF00989;mir-492;AAYZ01143552.1/22927-22812 9978:Ochotona princeps
(American pika)
Length = 116
Score = 56.0 bits (28), Expect = 5e-08
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 15 aagattcttggggccaccattgagaactccaagattgttctgcagatc 62
||||||| |||||||||||||| ||||||||||| || |||||||||
Sbjct: 44 aagattcacggggccaccattgacaactccaagatcgtcctgcagatc 91
>RF00989;mir-492;ABVD01338081.1/3139-3033 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 107
Score = 54.0 bits (27), Expect = 2e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 11 ggacaagattcttggggccaccattgagaactccaagat 49
|||||||||| |||| ||||||| |||||||||||||||
Sbjct: 40 ggacaagatttttggtgccaccactgagaactccaagat 78
>RF00989;mir-492;AANN01518369.1/2728-2624 9365:Erinaceus europaeus
(western European hedgehog)
Length = 105
Score = 54.0 bits (27), Expect = 2e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 27 gccaccattgagaactccaagattgttctgcagat 61
||||||||||||||||||||| |||| ||||||||
Sbjct: 45 gccaccattgagaactccaaggttgtcctgcagat 79
>RF00989;mir-492;ACBE01147133.1/1104-988 9685:Felis catus
(domestic cat)
Length = 117
Score = 54.0 bits (27), Expect = 2e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 1 aggagctgcgggacaagattcttggggccaccattgagaactc 43
|||| |||| ||||||||||||||| || ||||||||||||||
Sbjct: 30 aggacctgcaggacaagattcttggtgctaccattgagaactc 72
>RF00989;mir-492;ABRT010595294.1/1639-1525 9478:Tarsius syrichta
(Philippine tarsier)
Length = 115
Score = 54.0 bits (27), Expect = 2e-07
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 1 aggagctgcgggacaagattcttggggccaccattgagaactccaagattgttctgcag 59
|||| ||| |||||||||||||| | ||||||| ||||| ||||||||||| ||||||
Sbjct: 29 aggacctgtgggacaagattcttagtaccaccatcgagaattccaagattgtcctgcag 87
>RF00989;mir-492;AAYZ01059725.1/7706-7594 9978:Ochotona princeps
(American pika)
Length = 113
Score = 54.0 bits (27), Expect = 2e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 24 ggggccaccattgagaactccaagattgttctgcagatc 62
|||||||||||||| ||||||||||| || |||||||||
Sbjct: 50 ggggccaccattgacaactccaagatcgtcctgcagatc 88
>RF00989;mir-492;AANG01542985.1/2319-2440 9685:Felis catus
(domestic cat)
Length = 122
Score = 52.0 bits (26), Expect = 8e-07
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 16 agattcttggggccaccattgagaactccaagattgttctgcagat 61
||||||| || |||||||| |||||||||||||| || ||||||||
Sbjct: 51 agattctcggtgccaccatcgagaactccaagatcgtcctgcagat 96
>RF00989;mir-492;AAGW01537790.1/3268-3161 9986:Oryctolagus
cuniculus (rabbit)
Length = 108
Score = 50.1 bits (25), Expect = 3e-06
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 10 gggacaagattcttggggccaccattgagaactccaagattgttctgcagatc 62
||||| |||||||||| ||||||||||||||| ||| ||| || |||| ||||
Sbjct: 34 gggaccagattcttggtgccaccattgagaaccccaggatggtcctgctgatc 86
>RF00989;mir-492;ABQO010341125.1/2372-2257 9315:Macropus eugenii
(tammar wallaby)
Length = 116
Score = 48.1 bits (24), Expect = 1e-05
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 15 aagattcttggggccaccattgagaactccaagattgttctgca 58
||||||||||| ||| |||| |||||||| || |||||||||||
Sbjct: 44 aagattcttggtgcctccatcgagaactcaaatattgttctgca 87
>RF00989;mir-492;AAGW01569198.1/3881-3995 9986:Oryctolagus
cuniculus (rabbit)
Length = 115
Score = 44.1 bits (22), Expect = 2e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 11 ggacaagattcttggggccaccattgagaactcc 44
||||| ||||||||| ||||| ||||||||||||
Sbjct: 42 ggacatgattcttggtgccacgattgagaactcc 75
>RF00989;mir-492;AAIY01323094.1/901-786 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 116
Score = 44.1 bits (22), Expect = 2e-04
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 1 aggagctgcgggacaagattcttggggccaccattgagaactccaagattgttctgcaga 60
|||| |||||| || ||||||| || |||||||| ||||||||||| | || |||||||
Sbjct: 30 aggacctgcggcaccagattctcggtgccaccatccagaactccaaggtcgtgctgcaga 89
Query: 61 tc 62
||
Sbjct: 90 tc 91
>RF00989;mir-492;CAAA01050617.1/3040-3154 10090:Mus musculus
(house mouse)
Length = 115
Score = 42.1 bits (21), Expect = 7e-04
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 14 caagattcttggggccaccattgagaactccaagattgttctgca 58
|||||||||||| |||||||||| |||| | | || |||||||||
Sbjct: 42 caagattcttggtgccaccattgggaaccctaggactgttctgca 86
