miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;AAIY01434920.1/105-183 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 79
Score = 137 bits (69), Expect = 2e-32
Identities = 72/73 (98%)
Strand = Plus / Plus
Query: 7 ctgaaaagaagttgcccatgttattttcgcttgatatgtgacgaaacaaacatggtgcac 66
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 5 ctgaaaagaagttgcccatgttattttcgctttatatgtgacgaaacaaacatggtgcac 64
Query: 67 ttctttttcggta 79
|||||||||||||
Sbjct: 65 ttctttttcggta 77
>RF00641;mir-154;AACN010421419.1/1043-964 9615:Canis lupus
familiaris (dog)
Length = 80
Score = 107 bits (54), Expect = 2e-23
Identities = 66/70 (94%)
Strand = Plus / Plus
Query: 12 aagaagttgcccatgttattttcgcttgatatgtgacgaaacaaacatggtgcacttctt 71
|||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 11 aagaagttgcccgtgttattttcgcttgatacgtgccgaaacaaacatggtgcacttctt 70
Query: 72 tttcggtatc 81
| ||||||||
Sbjct: 71 tctcggtatc 80
>RF00641;mir-154;AAFC03086346.1/3792-3714 9913:Bos taurus (cattle)
Length = 79
Score = 103 bits (52), Expect = 3e-22
Identities = 65/68 (95%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 6 cctgaaaagaagttgcccatgttattttcgcttgatatgtgacgaaacaaacatggtgca 65
|||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 5 cctggaaagaagttgcccatgttcttttcgct-gatatgtgacgaaacaaacatggtgca 63
Query: 66 cttctttt 73
||||||||
Sbjct: 64 cttctttt 71
>RF00641;mir-154;ABRQ01054369.1/2520-2599 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 103 bits (52), Expect = 3e-22
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 14 gaagttgcccatgttattttcgcttgatatgtgacgaaacaaacatggtgcacttctttt 73
||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 13 gaagttgcccatgttcttttcgctttatacgtgacgaaacaaacatggtgcacttctttt 72
Query: 74 tcggtatc 81
| ||||||
Sbjct: 73 taggtatc 80
>RF00641;mir-154;AAPY01359973.1/4034-4113 37347:Tupaia belangeri
(northern tree shrew)
Length = 80
Score = 95.6 bits (48), Expect = 8e-20
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 14 gaagttgcccatgttattttcgcttgatatgtgacgaaacaaacatggtgcacttctttt 73
|||| ||||| |||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 13 gaagctgcccgtgttattttcgctttatgtgtgacgaaacaaacatggtgcacttctttt 72
Query: 74 tcggtatc 81
|||||||
Sbjct: 73 ccggtatc 80
>RF00641;mir-154;AAYZ01424897.1/1412-1491 9978:Ochotona princeps
(American pika)
Length = 80
Score = 91.7 bits (46), Expect = 1e-18
Identities = 64/70 (91%)
Strand = Plus / Plus
Query: 2 ggtccctgaaaagaagttgcccatgttattttcgcttgatatgtgacgaaacaaacatgg 61
||||||||| ||||||| ||||||||| |||||||| ||||||| ||||||||||||||
Sbjct: 1 ggtccctgagaagaagtcgcccatgttcttttcgctgaatatgtgccgaaacaaacatgg 60
Query: 62 tgcacttctt 71
||||||||||
Sbjct: 61 tgcacttctt 70
>RF00641;mir-154;ABRQ01054369.1/755-834 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 58.0 bits (29), Expect = 2e-08
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 13 agaagttgcccatgttattttcgcttgatatgtgacgaaacaaacatggtgcacttcttt 72
||||||||||| |||| |||||||| || |||||||||||| | |||||||||||||
Sbjct: 12 agaagttgcccgtgtttttttcgctgaatctgtgacgaaacattcgcggtgcacttcttt 71
Query: 73 ttcggtatc 81
||| |||||
Sbjct: 72 ttcagtatc 80
