miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00745;mir-499;ABRQ01106311.1/1341-1429 9813:Procavia capensis
(cape rock hyrax)
Length = 89
Score = 159 bits (80), Expect = 1e-38
Identities = 86/88 (97%)
Strand = Plus / Plus
Query: 19 ctgggcgggcggctgttaagacttgcagtgatgtttaactcctctccacgtgaacatcac 78
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgggcgggcagccgttaagacttgcagtgatgtttaactcctctccacgtgaacatcac 60
Query: 79 agcaagtctgtgctgcttcccgtcccca 106
||||||||||||||||||||||||||||
Sbjct: 61 agcaagtctgtgctgcttcccgtcccca 88
>RF00745;mir-499;AAHY01022368.1/76934-77022 10090:Mus musculus
(house mouse)
Length = 89
Score = 111 bits (56), Expect = 2e-24
Identities = 71/76 (93%)
Strand = Plus / Plus
Query: 20 tgggcgggcggctgttaagacttgcagtgatgtttaactcctctccacgtgaacatcaca 79
|||| |||| |||||||||||||||||||||||||| ||||||| || ||||||||||||
Sbjct: 2 tgggtgggcagctgttaagacttgcagtgatgtttagctcctctgcatgtgaacatcaca 61
Query: 80 gcaagtctgtgctgct 95
||||||||||||||||
Sbjct: 62 gcaagtctgtgctgct 77
>RF00745;mir-499;AALT01096934.1/620-533 42254:Sorex araneus
(European shrew)
Length = 88
Score = 109 bits (55), Expect = 9e-24
Identities = 71/75 (94%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 21 gggcgggcggctgttaagacttgcagtgatgtttaactcctctccacgtgaacatcacag 80
||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 3 gggcgggtggccgttaagacttgcagtgatgtttaactcctc-acacgtgaacatcacag 61
Query: 81 caagtctgtgctgct 95
|||||||||||||||
Sbjct: 62 caagtctgtgctgct 76
>RF00745;mir-499;AAIY01738857.1/91-1 9371:Echinops telfairi (small
Madagascar hedgehog)
Length = 91
Score = 107 bits (54), Expect = 3e-23
Identities = 70/74 (94%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 34 ttaagacttgcagtgatgtttaa-ctcctctccacgtgaacatcacagcaagtctgtgct 92
||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct: 17 ttaagacttgcagtgatgtttaaacttctgtccacgtgaacatcacagcaagtctgtgct 76
Query: 93 gcttcccgtcccca 106
||||| ||||||||
Sbjct: 77 gcttctcgtcccca 90
>RF00745;mir-499;AAPN01135512.1/158-246 9258:Ornithorhynchus
anatinus (platypus)
Length = 89
Score = 101 bits (51), Expect = 2e-21
Identities = 72/79 (91%)
Strand = Plus / Plus
Query: 19 ctgggcgggcggctgttaagacttgcagtgatgtttaactcctctccacgtgaacatcac 78
||||| |||| || ||||||||||| ||||||||||| ||| ||||||||||||||||||
Sbjct: 1 ctgggggggcagcggttaagacttgtagtgatgtttagctcatctccacgtgaacatcac 60
Query: 79 agcaagtctgtgctgcttc 97
||||||||||||||||||
Sbjct: 61 tgcaagtctgtgctgcttc 79
>RF00745;mir-499;AAFR03012197.1/530-442 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 89
Score = 85.7 bits (43), Expect = 1e-16
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 21 gggcgggcggctgttaagacttgcagtgatgtttaactcctctccacgtgaacatcacag 80
|||||||| ||||||||||||||||||||||||||| || |||| | ||||||||||||
Sbjct: 3 gggcgggcagctgttaagacttgcagtgatgtttaattcttctctatgtgaacatcacaa 62
Query: 81 caagtct 87
|||||||
Sbjct: 63 caagtct 69
>RF00745;mir-499;AAWZ01003580.1/63985-64074 28377:Anolis
carolinensis (green anole)
Length = 90
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 33 gttaagacttgcagtgatgttta 55
|||||||||||||||||||||||
Sbjct: 15 gttaagacttgcagtgatgttta 37
>RF00745;mir-499;CR555298.10/129727-129639 7955:Danio rerio
(zebrafish)
Length = 89
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 33 gttaagacttgcagtgatgttta 55
|||||||||||||||||||||||
Sbjct: 15 gttaagacttgcagtgatgttta 37
>RF00745;mir-499;CR847953.10/25811-25900 7955:Danio rerio
(zebrafish)
Length = 90
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 33 gttaagacttgcagtgatgttta 55
|||||||||||||||||||||||
Sbjct: 15 gttaagacttgcagtgatgttta 37
>RF00745;mir-499;AANH01006124.1/24032-23943 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 90
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 33 gttaagacttgcagtgatgttta 55
|||||||||||||||||||||||
Sbjct: 15 gttaagacttgcagtgatgttta 37
>RF00745;mir-499;BAAF04004562.1/510-599 8090:Oryzias latipes
(Japanese medaka)
Length = 90
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 33 gttaagacttgcagtgatgttta 55
|||||||||||||||||||||||
Sbjct: 15 gttaagacttgcagtgatgttta 37
