miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28694_hsa-mir-500a:mirbase
Length = 84
Score = 151 bits (76), Expect = 9e-38
Identities = 82/84 (97%)
Strand = Plus / Plus
Query: 1 gctccccctctctaatccttgctacctgggtgagagtgttgtctgaatgcaatgcacctg 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 gctccccctctctaatccttgctacctgggtgagagtgctgtctgaatgcaatgcacctg 60
Query: 61 ggcaaggattccgagagcgagagc 84
||||||||||| ||||||||||||
Sbjct: 61 ggcaaggattctgagagcgagagc 84
>31040_ppy-mir-500:mirbase
Length = 84
Score = 151 bits (76), Expect = 9e-38
Identities = 82/84 (97%)
Strand = Plus / Plus
Query: 1 gctccccctctctaatccttgctacctgggtgagagtgttgtctgaatgcaatgcacctg 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 gctccccctctctaatccttgctacctgggtgagagtgctgtctgaatgcaatgcacctg 60
Query: 61 ggcaaggattccgagagcgagagc 84
||||||||||| ||||||||||||
Sbjct: 61 ggcaaggattctgagagcgagagc 84
>27941_mml-mir-500:mirbase
Length = 84
Score = 143 bits (72), Expect = 2e-35
Identities = 81/84 (96%)
Strand = Plus / Plus
Query: 1 gctccccctctctaatccttgctacctgggtgagagtgttgtctgaatgcaatgcacctg 60
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 1 gctccccctctctaatccttgctacctgggtgagagtgctatctgaatgcaatgcacctg 60
Query: 61 ggcaaggattccgagagcgagagc 84
||||||||||| ||||||||||||
Sbjct: 61 ggcaaggattctgagagcgagagc 84
>27211_eca-mir-500-2:mirbase
Length = 84
Score = 141 bits (71), Expect = 9e-35
Identities = 80/83 (96%)
Strand = Plus / Plus
Query: 1 gctccccctctctaatccttgctacctgggtgagagtgttgtctgaatgcaatgcacctg 60
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 1 gctccccctctctaatccttgctacctgggtgagagtgctttctgaatgcaatgcacctg 60
Query: 61 ggcaaggattccgagagcgagag 83
||||||||||||||||| |||||
Sbjct: 61 ggcaaggattccgagagggagag 83
>30403_ptr-mir-500:mirbase
Length = 83
Score = 141 bits (71), Expect = 9e-35
Identities = 80/83 (96%)
Strand = Plus / Plus
Query: 2 ctccccctctctaatccttgctacctgggtgagagtgttgtctgaatgcaatgcacctgg 61
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 ctccccctctctaatccttgctacctgggtgagagtgctgtctgaatgcaatgcacctgg 60
Query: 62 gcaaggattccgagagcgagagc 84
|||||||||| ||| ||||||||
Sbjct: 61 gcaaggattctgagcgcgagagc 83
>33404_bta-mir-500:mirbase
Length = 84
Score = 129 bits (65), Expect = 3e-31
Identities = 74/77 (96%)
Strand = Plus / Plus
Query: 1 gctccccctctctaatccttgctacctgggtgagagtgttgtctgaatgcaatgcacctg 60
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 1 gctccccctctctaatccttgctacctgggtgagagtgctttctgaatgcaatgcacctg 60
Query: 61 ggcaaggattccgagag 77
||||||||||| |||||
Sbjct: 61 ggcaaggattctgagag 77
>34114_ssc-mir-500:mirbase
Length = 80
Score = 127 bits (64), Expect = 1e-30
Identities = 76/80 (95%)
Strand = Plus / Plus
Query: 5 cccctctctaatccttgctacctgggtgagagtgttgtctgaatgcaatgcacctgggca 64
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 1 cccctctctaatccttgctacctgggtgagagtgctgtgtgaatgcaatgcacctgggca 60
Query: 65 aggattccgagagcgagagc 84
||||||| ||||| ||||||
Sbjct: 61 aggattctgagagtgagagc 80
>27213_eca-mir-502:mirbase
Length = 80
Score = 105 bits (53), Expect = 5e-24
Identities = 71/77 (92%)
Strand = Plus / Plus
Query: 1 gctccccctctctaatccttgctacctgggtgagagtgttgtctgaatgcaatgcacctg 60
|||||||||||||||||||||||| ||||||| |||| ||||| |||||||||||||||
Sbjct: 2 gctccccctctctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctg 61
Query: 61 ggcaaggattccgagag 77
||||||||||| |||||
Sbjct: 62 ggcaaggattcagagag 78
>27214_eca-mir-502:mirbase
Length = 80
Score = 105 bits (53), Expect = 5e-24
Identities = 71/77 (92%)
Strand = Plus / Plus
Query: 1 gctccccctctctaatccttgctacctgggtgagagtgttgtctgaatgcaatgcacctg 60
|||||||||||||||||||||||| ||||||| |||| ||||| |||||||||||||||
Sbjct: 2 gctccccctctctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctg 61
Query: 61 ggcaaggattccgagag 77
||||||||||| |||||
Sbjct: 62 ggcaaggattcagagag 78
>31042_ppy-mir-502:mirbase
Length = 86
Score = 105 bits (53), Expect = 5e-24
Identities = 71/77 (92%)
Strand = Plus / Plus
Query: 1 gctccccctctctaatccttgctacctgggtgagagtgttgtctgaatgcaatgcacctg 60
|||||||||||||||||||||||| ||||||| |||| ||||| |||||||||||||||
Sbjct: 2 gctccccctctctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctg 61
Query: 61 ggcaaggattccgagag 77
||||||||||| |||||
Sbjct: 62 ggcaaggattcagagag 78
>31043_ppy-mir-502:mirbase
Length = 86
Score = 105 bits (53), Expect = 5e-24
Identities = 71/77 (92%)
Strand = Plus / Plus
Query: 1 gctccccctctctaatccttgctacctgggtgagagtgttgtctgaatgcaatgcacctg 60
|||||||||||||||||||||||| ||||||| |||| ||||| |||||||||||||||
Sbjct: 2 gctccccctctctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctg 61
Query: 61 ggcaaggattccgagag 77
||||||||||| |||||
Sbjct: 62 ggcaaggattcagagag 78
>26868_cfa-mir-500:mirbase
Length = 59
Score = 99.6 bits (50), Expect = 3e-22
Identities = 56/58 (96%)
Strand = Plus / Plus
Query: 14 aatccttgctacctgggtgagagtgttgtctgaatgcaatgcacctgggcaaggattc 71
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 1 aatccttgctacctgggtgagagtgctttctgaatgcaatgcacctgggcaaggattc 58
>28698_hsa-mir-502:mirbase
Length = 86
Score = 97.6 bits (49), Expect = 1e-21
Identities = 70/77 (90%)
Strand = Plus / Plus
Query: 1 gctccccctctctaatccttgctacctgggtgagagtgttgtctgaatgcaatgcacctg 60
|||||||||||||||||||||||| ||||||| |||| || || |||||||||||||||
Sbjct: 2 gctccccctctctaatccttgctatctgggtgctagtgctggctcaatgcaatgcacctg 61
Query: 61 ggcaaggattccgagag 77
||||||||||| |||||
Sbjct: 62 ggcaaggattcagagag 78
>28699_hsa-mir-502:mirbase
Length = 86
Score = 97.6 bits (49), Expect = 1e-21
Identities = 70/77 (90%)
Strand = Plus / Plus
Query: 1 gctccccctctctaatccttgctacctgggtgagagtgttgtctgaatgcaatgcacctg 60
|||||||||||||||||||||||| ||||||| |||| || || |||||||||||||||
Sbjct: 2 gctccccctctctaatccttgctatctgggtgctagtgctggctcaatgcaatgcacctg 61
Query: 61 ggcaaggattccgagag 77
||||||||||| |||||
Sbjct: 62 ggcaaggattcagagag 78
>30404_ptr-mir-500-2:mirbase
Length = 79
Score = 97.6 bits (49), Expect = 1e-21
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 3 tccccctctctaatccttgctacctgggtgagagtgttgtctgaatgcaatgcacctggg 62
|||||||||||||||||||||||||||||||||||| | |||||||||| |||||| ||
Sbjct: 1 tccccctctctaatccttgctacctgggtgagagtgctttctgaatgcagtgcacccagg 60
Query: 63 caaggattc 71
|||||||||
Sbjct: 61 caaggattc 69
>30406_ptr-mir-502:mirbase
Length = 85
Score = 97.6 bits (49), Expect = 1e-21
Identities = 70/77 (90%)
Strand = Plus / Plus
Query: 1 gctccccctctctaatccttgctacctgggtgagagtgttgtctgaatgcaatgcacctg 60
|||||||||||||||||||||||| ||||||| |||| || || |||||||||||||||
Sbjct: 1 gctccccctctctaatccttgctatctgggtgctagtgctggctcaatgcaatgcacctg 60
Query: 61 ggcaaggattccgagag 77
||||||||||| |||||
Sbjct: 61 ggcaaggattcagagag 77
>27943_mml-mir-502:mirbase
Length = 80
Score = 95.6 bits (48), Expect = 5e-21
Identities = 66/72 (91%)
Strand = Plus / Plus
Query: 6 ccctctctaatccttgctacctgggtgagagtgttgtctgaatgcaatgcacctgggcaa 65
||||||||||||||||||| ||||||| |||| ||||| ||||||||||||||||||||
Sbjct: 1 ccctctctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctgggcaa 60
Query: 66 ggattccgagag 77
|||||| |||||
Sbjct: 61 ggattcagagag 72
>27944_mml-mir-502:mirbase
Length = 80
Score = 95.6 bits (48), Expect = 5e-21
Identities = 66/72 (91%)
Strand = Plus / Plus
Query: 6 ccctctctaatccttgctacctgggtgagagtgttgtctgaatgcaatgcacctgggcaa 65
||||||||||||||||||| ||||||| |||| ||||| ||||||||||||||||||||
Sbjct: 1 ccctctctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctgggcaa 60
Query: 66 ggattccgagag 77
|||||| |||||
Sbjct: 61 ggattcagagag 72
>28695_hsa-mir-500b:mirbase
Length = 79
Score = 95.6 bits (48), Expect = 5e-21
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 4 ccccctctctaatccttgctacctgggtgagagtgttgtctgaatgcaatgcacctgggc 63
||||||||||||||||||||||||||||||||||| | |||||||||| |||||| |||
Sbjct: 1 ccccctctctaatccttgctacctgggtgagagtgctttctgaatgcagtgcacccaggc 60
Query: 64 aaggattc 71
||||||||
Sbjct: 61 aaggattc 68
>31041_ppy-mir-501:mirbase
Length = 78
Score = 93.7 bits (47), Expect = 2e-20
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 7 cctctctaatccttgctacctgggtgagagtgttgtctgaatgcaatgcacctgggcaag 66
|||||||||||||||||| ||||||| |||| ||||| |||||||||||||||||||||
Sbjct: 1 cctctctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctgggcaag 60
Query: 67 gattccgagag 77
||||| |||||
Sbjct: 61 gattcagagag 71
>28696_hsa-mir-501:mirbase
Length = 84
Score = 85.7 bits (43), Expect = 5e-18
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 7 cctctctaatccttgctacctgggtgagagtgttgtctgaatgcaatgcacctgggcaag 66
|||||||||||||| | |||||||||||||| | ||||||||||||||||| |||||||
Sbjct: 7 cctctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccgggcaag 66
Query: 67 gattccgagag 77
||||| |||||
Sbjct: 67 gattctgagag 77
>28697_hsa-mir-501:mirbase
Length = 84
Score = 85.7 bits (43), Expect = 5e-18
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 7 cctctctaatccttgctacctgggtgagagtgttgtctgaatgcaatgcacctgggcaag 66
|||||||||||||| | |||||||||||||| | ||||||||||||||||| |||||||
Sbjct: 7 cctctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccgggcaag 66
Query: 67 gattccgagag 77
||||| |||||
Sbjct: 67 gattctgagag 77
>30405_ptr-mir-501:mirbase
Length = 83
Score = 85.7 bits (43), Expect = 5e-18
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 7 cctctctaatccttgctacctgggtgagagtgttgtctgaatgcaatgcacctgggcaag 66
|||||||||||||| | |||||||||||||| | ||||||||||||||||| |||||||
Sbjct: 6 cctctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccgggcaag 65
Query: 67 gattccgagag 77
||||| |||||
Sbjct: 66 gattctgagag 76
>27212_eca-mir-501:mirbase
Length = 84
Score = 79.8 bits (40), Expect = 3e-16
Identities = 64/72 (88%)
Strand = Plus / Plus
Query: 1 gctccccctctctaatccttgctacctgggtgagagtgttgtctgaatgcaatgcacctg 60
|||| |||||||| |||||| | |||||||||||||| | || ||||||||||||||||
Sbjct: 1 gctctccctctctcatccttcgtccctgggtgagagtgctttccgaatgcaatgcacctg 60
Query: 61 ggcaaggattcc 72
||||||||||||
Sbjct: 61 ggcaaggattcc 72
>26869_cfa-mir-502:mirbase
Length = 59
Score = 75.8 bits (38), Expect = 4e-15
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 14 aatccttgctacctgggtgagagtgttgtctgaatgcaatgcacctgggcaaggattc 71
||||||||||| ||||||| |||| ||||| ||||||||||||||||||||||||||
Sbjct: 1 aatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctgggcaaggattc 58
>32188_mmu-mir-500:mirbase
Length = 92
Score = 73.8 bits (37), Expect = 2e-14
Identities = 68/77 (88%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 1 gctccccctctctaatccttgctacctgggtg-agagtgttgtctgaatgcaatgcacct 59
|||||||||||||||||||||||| ||||||| |||| | ||| ||||||||||||||
Sbjct: 8 gctccccctctctaatccttgctatctgggtgcttagtgctatctcaatgcaatgcacct 67
Query: 60 gggcaaggattccgaga 76
|||||||| ||| ||||
Sbjct: 68 gggcaagggttcagaga 84
>33405_bta-mir-502a-1:mirbase
Length = 85
Score = 71.9 bits (36), Expect = 7e-14
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 10 ctctaatccttgctacctgggtgagagtgttgtctgaatgcaatgcacctgggcaaggat 69
|||||||||||||| ||||||| |||| ||||| |||||||||||||||||||||||
Sbjct: 10 ctctaatccttgctctctgggtgctagtgctgtctccatgcaatgcacctgggcaaggat 69
Query: 70 tccgagag 77
|| |||||
Sbjct: 70 tcagagag 77
>27942_mml-mir-501:mirbase
Length = 84
Score = 69.9 bits (35), Expect = 3e-13
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 7 cctctctaatccttgctacctgggtgagagtgttgtctgaatgcaatgcacctgggcaag 66
|||||||||||||| | |||||||||||||| | |||||||||| |||||| ||||||
Sbjct: 7 cctctctaatcctttgtccctgggtgagagtgctttctgaatgcagtgcacccaggcaag 66
Query: 67 gattccgagag 77
||||| |||||
Sbjct: 67 gattctgagag 77
>33407_bta-mir-502b:mirbase
Length = 83
Score = 69.9 bits (35), Expect = 3e-13
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 5 cccctctctaatccttgctacctgggtgagagtgttgtctgaatgcaatgcacctgggca 64
|||||||||||| |||||| || |||||||||| | | |||||||||| ||||||||||
Sbjct: 4 cccctctctaattcttgctccccaggtgagagtgctttgtgaatgcaatccacctgggca 63
Query: 65 aggattc 71
|||||||
Sbjct: 64 aggattc 70
>32941_rno-mir-500:mirbase
Length = 80
Score = 67.9 bits (34), Expect = 1e-12
Identities = 65/74 (87%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 4 ccccctctctaatccttgctacctgggtg-agagtgttgtctgaatgcaatgcacctggg 62
||||||||||||||||||||| ||||||| |||| | ||| |||||||||||||||||
Sbjct: 1 ccccctctctaatccttgctatctgggtgcttagtgctatctcaatgcaatgcacctggg 60
Query: 63 caaggattccgaga 76
||||| ||| ||||
Sbjct: 61 caagggttcagaga 74
>32189_mmu-mir-501:mirbase
Length = 109
Score = 48.1 bits (24), Expect = 1e-06
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 7 cctctctaatccttgctacctgggtgagagtgttgtctgaatgcaatgcacctgggcaag 66
|||||||||||||| | ||||||||| | || | | || |||||||||||| |||||||
Sbjct: 17 cctctctaatcctttgtccctgggtgaaaatgctatttgtatgcaatgcacccgggcaag 76
Query: 67 gatt 70
||||
Sbjct: 77 gatt 80
>32190_mmu-mir-501:mirbase
Length = 109
Score = 48.1 bits (24), Expect = 1e-06
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 7 cctctctaatccttgctacctgggtgagagtgttgtctgaatgcaatgcacctgggcaag 66
|||||||||||||| | ||||||||| | || | | || |||||||||||| |||||||
Sbjct: 17 cctctctaatcctttgtccctgggtgaaaatgctatttgtatgcaatgcacccgggcaag 76
Query: 67 gatt 70
||||
Sbjct: 77 gatt 80
>32942_rno-mir-501:mirbase
Length = 84
Score = 48.1 bits (24), Expect = 1e-06
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 7 cctctctaatccttgctacctgggtgagagtgttgtctgaatgcaatgcacctgggcaag 66
|||||||||||||| | ||||||||| | || | | || |||||||||||| |||||||
Sbjct: 7 cctctctaatcctttgtccctgggtgaaaatgctatttgtatgcaatgcacccgggcaag 66
Query: 67 gatt 70
||||
Sbjct: 67 gatt 70
>33052_rno-mir-3560:mirbase
Length = 112
Score = 48.1 bits (24), Expect = 1e-06
Identities = 54/64 (84%)
Strand = Plus / Minus
Query: 7 cctctctaatccttgctacctgggtgagagtgttgtctgaatgcaatgcacctgggcaag 66
|||||||||||||| | ||||||||| | || | | || |||||||||||| |||||||
Sbjct: 95 cctctctaatcctttgtccctgggtgaaaatgctatttgtatgcaatgcacccgggcaag 36
Query: 67 gatt 70
||||
Sbjct: 35 gatt 32
>33406_bta-mir-502a-2:mirbase
Length = 90
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 48 tgcaatgcacctgggcaaggattc 71
||||||||||||||||||||||||
Sbjct: 55 tgcaatgcacctgggcaaggattc 78
