miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01903;mir-500;ABRR01444762.1/851-940 30538:Lama pacos (alpaca)
Length = 90
Score = 137 bits (69), Expect = 2e-32
Identities = 78/81 (96%)
Strand = Plus / Plus
Query: 4 ccccctctctaatccttgctacctgggtgagagtgttgtctgaatgcaatgcacctgggc 63
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 9 ccccctctctaatccttgctacctgggtgagagtgctgtctgaatgcaatgcacctgggc 68
Query: 64 aaggattccgagagcgagagc 84
|||||||| ||||| ||||||
Sbjct: 69 aaggattctgagagtgagagc 89
>RF01903;mir-500;AAGW01126437.1/5760-5849 9986:Oryctolagus
cuniculus (rabbit)
Length = 90
Score = 135 bits (68), Expect = 1e-31
Identities = 80/84 (95%)
Strand = Plus / Plus
Query: 1 gctccccctctctaatccttgctacctgggtgagagtgttgtctgaatgcaatgcacctg 60
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 6 gctccccctctctaatccttgctacctgggtgagagtgctaactgaatgcaatgcacctg 65
Query: 61 ggcaaggattccgagagcgagagc 84
||||||||||| ||||||||||||
Sbjct: 66 ggcaaggattcagagagcgagagc 89
>RF01903;mir-500;AAKN02053571.1/48125-48214 10141:Cavia porcellus
(domestic guinea pig)
Length = 90
Score = 103 bits (52), Expect = 3e-22
Identities = 76/84 (90%)
Strand = Plus / Plus
Query: 1 gctccccctctctaatccttgctacctgggtgagagtgttgtctgaatgcaatgcacctg 60
|||||||||||||||||||||||||||||||||||||| | | |||||||| ||||||||
Sbjct: 6 gctccccctctctaatccttgctacctgggtgagagtgctttgtgaatgcagtgcacctg 65
Query: 61 ggcaaggattccgagagcgagagc 84
||||||| ||| | ||| ||||||
Sbjct: 66 ggcaagggttctgtgagagagagc 89
>RF01903;mir-500;AAPY01377727.1/1385-1474 37347:Tupaia belangeri
(northern tree shrew)
Length = 90
Score = 101 bits (51), Expect = 1e-21
Identities = 66/71 (92%)
Strand = Plus / Plus
Query: 1 gctccccctctctaatccttgctacctgggtgagagtgttgtctgaatgcaatgcacctg 60
|||||| ||||||||||||||||||||||||||||||| | |||||||||||| |||||
Sbjct: 6 gctccctctctctaatccttgctacctgggtgagagtgctttctgaatgcaattcaccta 65
Query: 61 ggcaaggattc 71
|||||||||||
Sbjct: 66 ggcaaggattc 76
>RF01903;mir-500;AAQQ01366224.1/356-445 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 90
Score = 101 bits (51), Expect = 1e-21
Identities = 75/83 (90%)
Strand = Plus / Plus
Query: 1 gctccccctctctaatccttgctacctgggtgagagtgttgtctgaatgcaatgcacctg 60
|||||||||||||||||||||||| ||||||||||||| | || ||||||| ||||||||
Sbjct: 6 gctccccctctctaatccttgctatctgggtgagagtgctttccgaatgcagtgcacctg 65
Query: 61 ggcaaggattccgagagcgagag 83
||||||| || |||||| |||||
Sbjct: 66 ggcaagggtttcgagagggagag 88
>RF01903;mir-500;AANU01113554.1/19321-19232 9544:Macaca mulatta
(rhesus monkey)
Length = 90
Score = 93.7 bits (47), Expect = 3e-19
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 1 gctccccctctctaatccttgctacctgggtgagagtgttgtctgaatgcaatgcacctg 60
||||||||| |||||||||||||||||||||||||||| | |||||||||| ||||||
Sbjct: 6 gctccccctgtctaatccttgctacctgggtgagagtgctttctgaatgcagtgcaccca 65
Query: 61 ggcaaggattc 71
|||||||||||
Sbjct: 66 ggcaaggattc 76
>RF01903;mir-500;AAGU02358869.1/7585-7674 9785:Loxodonta africana
(African savanna elephant)
Length = 90
Score = 89.7 bits (45), Expect = 5e-18
Identities = 69/77 (89%)
Strand = Plus / Plus
Query: 1 gctccccctctctaatccttgctacctgggtgagagtgttgtctgaatgcaatgcacctg 60
|||||| ||||||||||||||||| ||||||| |||| ||||| ||||||||||||||
Sbjct: 6 gctccctctctctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcaccta 65
Query: 61 ggcaaggattccgagag 77
||||||||||| |||||
Sbjct: 66 ggcaaggattcagagag 82
>RF01903;mir-500;ABRT010259438.1/4434-4523 9478:Tarsius syrichta
(Philippine tarsier)
Length = 90
Score = 85.7 bits (43), Expect = 8e-17
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 7 cctctctaatccttgctacctgggtgagagtgttgtctgaatgcaatgcacctgggcaag 66
|||||||||||||| | |||||||||||||| | ||| ||||||||||||| |||||||
Sbjct: 12 cctctctaatcctttgtccctgggtgagagtgctttctaaatgcaatgcacccgggcaag 71
Query: 67 gattccgagag 77
|||||||||||
Sbjct: 72 gattccgagag 82
>RF01903;mir-500;AALT01601729.1/736-647 42254:Sorex araneus
(European shrew)
Length = 90
Score = 81.8 bits (41), Expect = 1e-15
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 3 tccccctctctaatccttgctacctgggtgagagtgttgtctgaatgcaatgcacctggg 62
|||| |||||||||||||||||||||||||||| || | | |||||||||||||||||
Sbjct: 8 tccctctctctaatccttgctacctgggtgagaatgcttttgaaatgcaatgcacctggg 67
Query: 63 caaggattc 71
|||||||||
Sbjct: 68 caaggattc 76
>RF01903;mir-500;AAWR02023860.1/12501-12589 9796:Equus caballus
(horse)
Length = 89
Score = 79.8 bits (40), Expect = 5e-15
Identities = 64/72 (88%)
Strand = Plus / Plus
Query: 1 gctccccctctctaatccttgctacctgggtgagagtgttgtctgaatgcaatgcacctg 60
|||| |||||||| |||||| | |||||||||||||| | || ||||||||||||||||
Sbjct: 6 gctctccctctctcatccttcgtccctgggtgagagtgctttccgaatgcaatgcacctg 65
Query: 61 ggcaaggattcc 72
||||||||||||
Sbjct: 66 ggcaaggattcc 77
>RF01903;mir-500;CABD01395115.2/3352-3441 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 90
Score = 77.8 bits (39), Expect = 2e-14
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 7 cctctctaatccttgctacctgggtgagagtgttgtctgaatgcaatgcacctgggcaag 66
||||||||||| || | |||||||||||||| | ||||||||||||||||| |||||||
Sbjct: 12 cctctctaatcgtttgtccctgggtgagagtgctttctgaatgcaatgcacccgggcaag 71
Query: 67 gattccgagag 77
||||| |||||
Sbjct: 72 gattctgagag 82
>RF01903;mir-500;AALT01601729.1/2904-2815 42254:Sorex araneus
(European shrew)
Length = 90
Score = 71.9 bits (36), Expect = 1e-12
Identities = 61/68 (89%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 6 ccctctctaatccttgctacctgggtgagagtgttgtctgaatgcaatgcacctggg-ca 64
||||||| |||||||| ||||||||||||| || | || |||||||||||||||||| ||
Sbjct: 11 ccctctcgaatccttgttacctgggtgagaatgctttcagaatgcaatgcacctgggaca 70
Query: 65 aggattcc 72
||||||||
Sbjct: 71 aggattcc 78
>RF01903;mir-500;AALT01601729.1/3692-3602 42254:Sorex araneus
(European shrew)
Length = 91
Score = 71.9 bits (36), Expect = 1e-12
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 8 ctctctaatccttgctacctgggtgagagtgttgtctgaatgcaatgcacctgggcaagg 67
|||||||||||||||||||||| || |||| | ||| |||||||||||||||||||||
Sbjct: 13 ctctctaatccttgctacctggttgctagtgctttctatatgcaatgcacctgggcaagg 72
Query: 68 attc 71
||||
Sbjct: 73 attc 76
>RF01903;mir-500;AAFC03003598.1/85766-85678 9913:Bos taurus
(cattle)
Length = 89
Score = 71.9 bits (36), Expect = 1e-12
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 10 ctctaatccttgctacctgggtgagagtgttgtctgaatgcaatgcacctgggcaaggat 69
|||||||||||||| ||||||| |||| ||||| |||||||||||||||||||||||
Sbjct: 14 ctctaatccttgctctctgggtgctagtgctgtctccatgcaatgcacctgggcaaggat 73
Query: 70 tccgagag 77
|| |||||
Sbjct: 74 tcagagag 81
>RF01903;mir-500;AAPY01377726.1/2576-2664 37347:Tupaia belangeri
(northern tree shrew)
Length = 89
Score = 71.9 bits (36), Expect = 1e-12
Identities = 69/80 (86%)
Strand = Plus / Plus
Query: 5 cccctctctaatccttgctacctgggtgagagtgttgtctgaatgcaatgcacctgggca 64
||||| ||||||||||||||||||||||||| || | ||| |||||||| ||||| ||
Sbjct: 9 cccctatctaatccttgctacctgggtgagaatgctatctctgtgcaatgctcctggaca 68
Query: 65 aggattccgagagcgagagc 84
||||||| ||||| ||||||
Sbjct: 69 aggattctgagagtgagagc 88
>RF01903;mir-500;AAKN02053571.1/46149-46243 10141:Cavia porcellus
(domestic guinea pig)
Length = 95
Score = 71.9 bits (36), Expect = 1e-12
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 11 tctaatccttgctacctgggtgagagtgttgtctgaatgcaatgcacctgggcaag 66
|||||||||||||||| | ||||||||| ||||| ||||||||||| |||||||||
Sbjct: 16 tctaatccttgctacccgagtgagagtgctgtctcaatgcaatgcatctgggcaag 71
>RF01903;mir-500;AAFC03003598.1/91611-91523 9913:Bos taurus
(cattle)
Length = 89
Score = 69.9 bits (35), Expect = 5e-12
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 5 cccctctctaatccttgctacctgggtgagagtgttgtctgaatgcaatgcacctgggca 64
|||||||||||| |||||| || |||||||||| | | |||||||||| ||||||||||
Sbjct: 9 cccctctctaattcttgctccccaggtgagagtgctttgtgaatgcaatccacctgggca 68
Query: 65 aggattc 71
|||||||
Sbjct: 69 aggattc 75
>RF01903;mir-500;ABRO01329853.1/364-457 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 94
Score = 69.9 bits (35), Expect = 5e-12
Identities = 71/81 (87%), Gaps = 4/81 (4%)
Strand = Plus / Plus
Query: 1 gctccccctctctaatccttgctacctgggtgagagtg-ttg---tctgaatgcaatgca 56
||||| |||||||||||||| | ||||||||||| || ||| |||||||||||||||
Sbjct: 6 gctcctcctctctaatcctttgtccctgggtgagaatgcttgctttctgaatgcaatgca 65
Query: 57 cctgggcaaggattccgagag 77
|||||||||||||||| ||||
Sbjct: 66 cctgggcaaggattccaagag 86
>RF01903;mir-500;ABDC01288936.1/7113-7202 30608:Microcebus murinus
(gray mouse lemur)
Length = 90
Score = 65.9 bits (33), Expect = 7e-11
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 5 cccctctctaatccttgctacctgggtgagagtgttgtctgaatgcaatgcacctgggca 64
||||||||||||||||||| ||||||| | || ||| | ||||||||||||||||||
Sbjct: 10 cccctctctaatccttgctgtctgggtgctaatgctgtgtcgatgcaatgcacctgggca 69
Query: 65 aggattccgagag 77
||||||| |||||
Sbjct: 70 aggattcagagag 82
>RF01903;mir-500;AAGU02358869.1/3530-3617 9785:Loxodonta africana
(African savanna elephant)
Length = 88
Score = 61.9 bits (31), Expect = 1e-09
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 2 ctccccctctctaatccttgctacctgggtgagagtgttgtctgaatgcaatgcacctgg 61
|||||| |||||||||||| |||||||||| | ||| ||||| |||||| ||||| |||
Sbjct: 7 ctccccttctctaatccttagtacctgggtgtgggtgctgtctcaatgcagtgcacatgg 66
Query: 62 gcaaggattcc 72
||||| |||||
Sbjct: 67 gcaagcattcc 77
>RF01903;mir-500;AL663104.17/15029-14940 10090:Mus musculus (house
mouse)
Length = 90
Score = 48.1 bits (24), Expect = 2e-05
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 7 cctctctaatccttgctacctgggtgagagtgttgtctgaatgcaatgcacctgggcaag 66
|||||||||||||| | ||||||||| | || | | || |||||||||||| |||||||
Sbjct: 12 cctctctaatcctttgtccctgggtgaaaatgctatttgtatgcaatgcacccgggcaag 71
Query: 67 gatt 70
||||
Sbjct: 72 gatt 75
>RF01903;mir-500;ABRP01179571.1/608-696 132908:Pteropus vampyrus
(large flying fox)
Length = 89
Score = 46.1 bits (23), Expect = 7e-05
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 1 gctccccctctctaatccttgctacctgggtgagagtgttgtctgaatgcaatgcacctg 60
||||||||||||| |||||| | |||| |||||||| | || |||||||||||| |
Sbjct: 6 gctccccctctctcatcctttgtctctggttgagagtgctttcaaaatgcaatgcactgg 65
Query: 61 ggcaaggattc 71
|||||||||||
Sbjct: 66 ggcaaggattc 76
>RF01903;mir-500;AAGW01126437.1/3638-3727 9986:Oryctolagus
cuniculus (rabbit)
Length = 90
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 48 tgcaatgcacctgggcaaggatt 70
|||||||||||||||||||||||
Sbjct: 52 tgcaatgcacctgggcaaggatt 74
>RF01903;mir-500;ABRQ01341134.1/4896-4985 9813:Procavia capensis
(cape rock hyrax)
Length = 90
Score = 44.1 bits (22), Expect = 3e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 1 gctccccctctctaatccttgctacctgggtgagagtg 38
||||||||||||||||||||| |||| |||| |||||
Sbjct: 6 gctccccctctctaatccttggaacctaggtgtgagtg 43
