miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01903;mir-500;ABRR01444762.1/851-940 30538:Lama pacos (alpaca)
Length = 90
Score = 135 bits (68), Expect = 1e-31
Identities = 77/80 (96%)
Strand = Plus / Plus
Query: 4 ccccctctctaatccttgctacctgggtgagagtgctttctgaatgcaatgcacctgggc 63
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 9 ccccctctctaatccttgctacctgggtgagagtgctgtctgaatgcaatgcacctgggc 68
Query: 64 aaggattccgagagggagag 83
|||||||| ||||| |||||
Sbjct: 69 aaggattctgagagtgagag 88
>RF01903;mir-500;AAGW01126437.1/5760-5849 9986:Oryctolagus
cuniculus (rabbit)
Length = 90
Score = 133 bits (67), Expect = 4e-31
Identities = 79/83 (95%)
Strand = Plus / Plus
Query: 1 gctccccctctctaatccttgctacctgggtgagagtgctttctgaatgcaatgcacctg 60
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 6 gctccccctctctaatccttgctacctgggtgagagtgctaactgaatgcaatgcacctg 65
Query: 61 ggcaaggattccgagagggagag 83
||||||||||| ||||| |||||
Sbjct: 66 ggcaaggattcagagagcgagag 88
>RF01903;mir-500;AAQQ01366224.1/356-445 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 90
Score = 127 bits (64), Expect = 2e-29
Identities = 79/84 (94%)
Strand = Plus / Plus
Query: 1 gctccccctctctaatccttgctacctgggtgagagtgctttctgaatgcaatgcacctg 60
|||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||
Sbjct: 6 gctccccctctctaatccttgctatctgggtgagagtgctttccgaatgcagtgcacctg 65
Query: 61 ggcaaggattccgagagggagagt 84
||||||| || |||||||||||||
Sbjct: 66 ggcaagggtttcgagagggagagt 89
>RF01903;mir-500;AAPY01377727.1/1385-1474 37347:Tupaia belangeri
(northern tree shrew)
Length = 90
Score = 117 bits (59), Expect = 2e-26
Identities = 68/71 (95%)
Strand = Plus / Plus
Query: 1 gctccccctctctaatccttgctacctgggtgagagtgctttctgaatgcaatgcacctg 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 6 gctccctctctctaatccttgctacctgggtgagagtgctttctgaatgcaattcaccta 65
Query: 61 ggcaaggattc 71
|||||||||||
Sbjct: 66 ggcaaggattc 76
>RF01903;mir-500;AAKN02053571.1/48125-48214 10141:Cavia porcellus
(domestic guinea pig)
Length = 90
Score = 117 bits (59), Expect = 2e-26
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 1 gctccccctctctaatccttgctacctgggtgagagtgctttctgaatgcaatgcacctg 60
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 6 gctccccctctctaatccttgctacctgggtgagagtgctttgtgaatgcagtgcacctg 65
Query: 61 ggcaagg 67
|||||||
Sbjct: 66 ggcaagg 72
>RF01903;mir-500;AANU01113554.1/19321-19232 9544:Macaca mulatta
(rhesus monkey)
Length = 90
Score = 109 bits (55), Expect = 6e-24
Identities = 67/71 (94%)
Strand = Plus / Plus
Query: 1 gctccccctctctaatccttgctacctgggtgagagtgctttctgaatgcaatgcacctg 60
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 6 gctccccctgtctaatccttgctacctgggtgagagtgctttctgaatgcagtgcaccca 65
Query: 61 ggcaaggattc 71
|||||||||||
Sbjct: 66 ggcaaggattc 76
>RF01903;mir-500;ABRT010259438.1/4434-4523 9478:Tarsius syrichta
(Philippine tarsier)
Length = 90
Score = 105 bits (53), Expect = 9e-23
Identities = 68/73 (93%)
Strand = Plus / Plus
Query: 7 cctctctaatccttgctacctgggtgagagtgctttctgaatgcaatgcacctgggcaag 66
|||||||||||||| | |||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 12 cctctctaatcctttgtccctgggtgagagtgctttctaaatgcaatgcacccgggcaag 71
Query: 67 gattccgagaggg 79
|||||||||||||
Sbjct: 72 gattccgagaggg 84
>RF01903;mir-500;AALT01601729.1/736-647 42254:Sorex araneus
(European shrew)
Length = 90
Score = 97.6 bits (49), Expect = 2e-20
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 3 tccccctctctaatccttgctacctgggtgagagtgctttctgaatgcaatgcacctggg 62
|||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 8 tccctctctctaatccttgctacctgggtgagaatgcttttgaaatgcaatgcacctggg 67
Query: 63 caaggattc 71
|||||||||
Sbjct: 68 caaggattc 76
>RF01903;mir-500;CABD01395115.2/3352-3441 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 90
Score = 97.6 bits (49), Expect = 2e-20
Identities = 67/73 (91%)
Strand = Plus / Plus
Query: 7 cctctctaatccttgctacctgggtgagagtgctttctgaatgcaatgcacctgggcaag 66
||||||||||| || | |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 12 cctctctaatcgtttgtccctgggtgagagtgctttctgaatgcaatgcacccgggcaag 71
Query: 67 gattccgagaggg 79
||||| |||||||
Sbjct: 72 gattctgagaggg 84
>RF01903;mir-500;AAWR02023860.1/12501-12589 9796:Equus caballus
(horse)
Length = 89
Score = 95.6 bits (48), Expect = 8e-20
Identities = 66/72 (91%)
Strand = Plus / Plus
Query: 1 gctccccctctctaatccttgctacctgggtgagagtgctttctgaatgcaatgcacctg 60
|||| |||||||| |||||| | ||||||||||||||||||| ||||||||||||||||
Sbjct: 6 gctctccctctctcatccttcgtccctgggtgagagtgctttccgaatgcaatgcacctg 65
Query: 61 ggcaaggattcc 72
||||||||||||
Sbjct: 66 ggcaaggattcc 77
>RF01903;mir-500;AAGU02358869.1/7585-7674 9785:Loxodonta africana
(African savanna elephant)
Length = 90
Score = 93.7 bits (47), Expect = 3e-19
Identities = 71/79 (89%)
Strand = Plus / Plus
Query: 1 gctccccctctctaatccttgctacctgggtgagagtgctttctgaatgcaatgcacctg 60
|||||| ||||||||||||||||| ||||||| |||||| ||| ||||||||||||||
Sbjct: 6 gctccctctctctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcaccta 65
Query: 61 ggcaaggattccgagaggg 79
||||||||||| |||||||
Sbjct: 66 ggcaaggattcagagaggg 84
>RF01903;mir-500;AALT01601729.1/2904-2815 42254:Sorex araneus
(European shrew)
Length = 90
Score = 87.7 bits (44), Expect = 2e-17
Identities = 63/68 (92%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 6 ccctctctaatccttgctacctgggtgagagtgctttctgaatgcaatgcacctggg-ca 64
||||||| |||||||| ||||||||||||| ||||||| |||||||||||||||||| ||
Sbjct: 11 ccctctcgaatccttgttacctgggtgagaatgctttcagaatgcaatgcacctgggaca 70
Query: 65 aggattcc 72
||||||||
Sbjct: 71 aggattcc 78
>RF01903;mir-500;AALT01601729.1/3692-3602 42254:Sorex araneus
(European shrew)
Length = 91
Score = 87.7 bits (44), Expect = 2e-17
Identities = 59/64 (92%)
Strand = Plus / Plus
Query: 8 ctctctaatccttgctacctgggtgagagtgctttctgaatgcaatgcacctgggcaagg 67
|||||||||||||||||||||| || |||||||||| |||||||||||||||||||||
Sbjct: 13 ctctctaatccttgctacctggttgctagtgctttctatatgcaatgcacctgggcaagg 72
Query: 68 attc 71
||||
Sbjct: 73 attc 76
>RF01903;mir-500;AAFC03003598.1/91611-91523 9913:Bos taurus
(cattle)
Length = 89
Score = 85.7 bits (43), Expect = 8e-17
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 5 cccctctctaatccttgctacctgggtgagagtgctttctgaatgcaatgcacctgggca 64
|||||||||||| |||||| || |||||||||||||| |||||||||| ||||||||||
Sbjct: 9 cccctctctaattcttgctccccaggtgagagtgctttgtgaatgcaatccacctgggca 68
Query: 65 aggattc 71
|||||||
Sbjct: 69 aggattc 75
>RF01903;mir-500;ABRO01329853.1/364-457 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 94
Score = 85.7 bits (43), Expect = 8e-17
Identities = 77/88 (87%), Gaps = 4/88 (4%)
Strand = Plus / Plus
Query: 1 gctccccctctctaatccttgctacctgggtgaga----gtgctttctgaatgcaatgca 56
||||| |||||||||||||| | ||||||||||| ||||||||||||||||||||
Sbjct: 6 gctcctcctctctaatcctttgtccctgggtgagaatgcttgctttctgaatgcaatgca 65
Query: 57 cctgggcaaggattccgagagggagagt 84
|||||||||||||||| |||||| ||||
Sbjct: 66 cctgggcaaggattccaagagggtgagt 93
>RF01903;mir-500;AAPY01377726.1/2576-2664 37347:Tupaia belangeri
(northern tree shrew)
Length = 89
Score = 77.8 bits (39), Expect = 2e-14
Identities = 69/79 (87%)
Strand = Plus / Plus
Query: 5 cccctctctaatccttgctacctgggtgagagtgctttctgaatgcaatgcacctgggca 64
||||| ||||||||||||||||||||||||| |||| ||| |||||||| ||||| ||
Sbjct: 9 cccctatctaatccttgctacctgggtgagaatgctatctctgtgcaatgctcctggaca 68
Query: 65 aggattccgagagggagag 83
||||||| ||||| |||||
Sbjct: 69 aggattctgagagtgagag 87
>RF01903;mir-500;AAFC03003598.1/85766-85678 9913:Bos taurus
(cattle)
Length = 89
Score = 75.8 bits (38), Expect = 8e-14
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 10 ctctaatccttgctacctgggtgagagtgctttctgaatgcaatgcacctgggcaaggat 69
|||||||||||||| ||||||| |||||| ||| |||||||||||||||||||||||
Sbjct: 14 ctctaatccttgctctctgggtgctagtgctgtctccatgcaatgcacctgggcaaggat 73
Query: 70 tccgagaggg 79
|| |||||||
Sbjct: 74 tcagagaggg 83
>RF01903;mir-500;AAKN02053571.1/46149-46243 10141:Cavia porcellus
(domestic guinea pig)
Length = 95
Score = 71.9 bits (36), Expect = 1e-12
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 11 tctaatccttgctacctgggtgagagtgctttctgaatgcaatgcacctgggcaag 66
|||||||||||||||| | ||||||||||| ||| ||||||||||| |||||||||
Sbjct: 16 tctaatccttgctacccgagtgagagtgctgtctcaatgcaatgcatctgggcaag 71
>RF01903;mir-500;ABDC01288936.1/7113-7202 30608:Microcebus murinus
(gray mouse lemur)
Length = 90
Score = 69.9 bits (35), Expect = 5e-12
Identities = 65/75 (86%)
Strand = Plus / Plus
Query: 5 cccctctctaatccttgctacctgggtgagagtgctttctgaatgcaatgcacctgggca 64
||||||||||||||||||| ||||||| | |||| | | ||||||||||||||||||
Sbjct: 10 cccctctctaatccttgctgtctgggtgctaatgctgtgtcgatgcaatgcacctgggca 69
Query: 65 aggattccgagaggg 79
||||||| |||||||
Sbjct: 70 aggattcagagaggg 84
>RF01903;mir-500;ABRP01179571.1/608-696 132908:Pteropus vampyrus
(large flying fox)
Length = 89
Score = 61.9 bits (31), Expect = 1e-09
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 1 gctccccctctctaatccttgctacctgggtgagagtgctttctgaatgcaatgcacctg 60
||||||||||||| |||||| | |||| ||||||||||||| |||||||||||| |
Sbjct: 6 gctccccctctctcatcctttgtctctggttgagagtgctttcaaaatgcaatgcactgg 65
Query: 61 ggcaaggattc 71
|||||||||||
Sbjct: 66 ggcaaggattc 76
>RF01903;mir-500;AAGW01126437.1/3638-3727 9986:Oryctolagus
cuniculus (rabbit)
Length = 90
Score = 61.9 bits (31), Expect = 1e-09
Identities = 56/63 (88%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 8 ctctctaatccttgctacctgggtgagagtgctttctgaatgcaatgcacctgggcaagg 67
|||||||||||||| ||||||| || |||||||||| ||||||||||||||||||||
Sbjct: 13 ctctctaatccttgatacctgg-tgttagtgctttctatgtgcaatgcacctgggcaagg 71
Query: 68 att 70
|||
Sbjct: 72 att 74
>RF01903;mir-500;AAGU02358869.1/3530-3617 9785:Loxodonta africana
(African savanna elephant)
Length = 88
Score = 61.9 bits (31), Expect = 1e-09
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 2 ctccccctctctaatccttgctacctgggtgagagtgctttctgaatgcaatgcacctgg 61
|||||| |||||||||||| |||||||||| | ||||| ||| |||||| ||||| |||
Sbjct: 7 ctccccttctctaatccttagtacctgggtgtgggtgctgtctcaatgcagtgcacatgg 66
Query: 62 gcaaggattcc 72
||||| |||||
Sbjct: 67 gcaagcattcc 77
>RF01903;mir-500;ABRT010259437.1/774-863 9478:Tarsius syrichta
(Philippine tarsier)
Length = 90
Score = 56.0 bits (28), Expect = 7e-08
Identities = 56/64 (87%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 8 ctctctaatccttgctacctgggtgagagtgctttctgaatgcaatgcacctgggcaagg 67
|||| ||||||||| ||||||| || |||||||||| |||||||| ||||||||||||
Sbjct: 13 ctctttaatccttgatacctgg-tgctagtgctttctacatgcaatggacctgggcaagg 71
Query: 68 attc 71
||||
Sbjct: 72 attc 75
>RF01903;mir-500;AL663104.17/15029-14940 10090:Mus musculus (house
mouse)
Length = 90
Score = 56.0 bits (28), Expect = 7e-08
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 7 cctctctaatccttgctacctgggtgagagtgctttctgaatgcaatgcacctgggcaag 66
|||||||||||||| | ||||||||| | |||| | || |||||||||||| |||||||
Sbjct: 12 cctctctaatcctttgtccctgggtgaaaatgctatttgtatgcaatgcacccgggcaag 71
Query: 67 gatt 70
||||
Sbjct: 72 gatt 75
>RF01903;mir-500;AAKN02053571.1/47619-47708 10141:Cavia porcellus
(domestic guinea pig)
Length = 90
Score = 54.0 bits (27), Expect = 3e-07
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 1 gctccccctctctaatccttgctacctgggtgagagtgctttctgaatgcaatgcacctg 60
||||| |||||||||||||| | |||| |||||| ||||||| ||||||| ||| ||
Sbjct: 6 gctcctcctctctaatcctttgtccctgagtgagaatgctttcagaatgcagtgctccca 65
Query: 61 ggcaaggattccgagaggg 79
||||||| ||| |||||||
Sbjct: 66 ggcaagggttctgagaggg 84
>RF01903;mir-500;AAEX02025396.1/212337-212249 9615:Canis lupus
familiaris (dog)
Length = 89
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 25 cctgggtgagagtgctttctgaatgcaatgcacc 58
|||| ||||||||||||||| |||||||||||||
Sbjct: 30 cctgagtgagagtgctttctaaatgcaatgcacc 63
>RF01903;mir-500;ABRQ01341134.1/4896-4985 9813:Procavia capensis
(cape rock hyrax)
Length = 90
Score = 48.1 bits (24), Expect = 2e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 1 gctccccctctctaatccttgctacctgggtgagagtgct 40
||||||||||||||||||||| |||| |||| |||||||
Sbjct: 6 gctccccctctctaatccttggaacctaggtgtgagtgct 45
