miRNEST 2.0, an integrative microRNA resource :: BLAST
>28696_hsa-mir-501:mirbase
Length = 84
Score = 101 bits (51), Expect = 8e-23
Identities = 66/71 (92%)
Strand = Plus / Plus
Query: 1 gctctccctctctcatccttcgtccctgggtgagagtgctttccgaatgcaatgcacctg 60
||||| ||||||| |||||| |||||||||||||||||||||| |||||||||||||| |
Sbjct: 1 gctcttcctctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccg 60
Query: 61 ggcaaggattc 71
|||||||||||
Sbjct: 61 ggcaaggattc 71
>28697_hsa-mir-501:mirbase
Length = 84
Score = 101 bits (51), Expect = 8e-23
Identities = 66/71 (92%)
Strand = Plus / Plus
Query: 1 gctctccctctctcatccttcgtccctgggtgagagtgctttccgaatgcaatgcacctg 60
||||| ||||||| |||||| |||||||||||||||||||||| |||||||||||||| |
Sbjct: 1 gctcttcctctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccg 60
Query: 61 ggcaaggattc 71
|||||||||||
Sbjct: 61 ggcaaggattc 71
>30405_ptr-mir-501:mirbase
Length = 83
Score = 99.6 bits (50), Expect = 3e-22
Identities = 65/70 (92%)
Strand = Plus / Plus
Query: 2 ctctccctctctcatccttcgtccctgggtgagagtgctttccgaatgcaatgcacctgg 61
|||| ||||||| |||||| |||||||||||||||||||||| |||||||||||||| ||
Sbjct: 1 ctcttcctctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccgg 60
Query: 62 gcaaggattc 71
||||||||||
Sbjct: 61 gcaaggattc 70
>27211_eca-mir-500-2:mirbase
Length = 84
Score = 95.6 bits (48), Expect = 5e-21
Identities = 66/72 (91%)
Strand = Plus / Plus
Query: 1 gctctccctctctcatccttcgtccctgggtgagagtgctttccgaatgcaatgcacctg 60
|||| |||||||| |||||| | ||||||||||||||||||| ||||||||||||||||
Sbjct: 1 gctccccctctctaatccttgctacctgggtgagagtgctttctgaatgcaatgcacctg 60
Query: 61 ggcaaggattcc 72
||||||||||||
Sbjct: 61 ggcaaggattcc 72
>33404_bta-mir-500:mirbase
Length = 84
Score = 93.7 bits (47), Expect = 2e-20
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 1 gctctccctctctcatccttcgtccctgggtgagagtgctttccgaatgcaatgcacctg 60
|||| |||||||| |||||| | ||||||||||||||||||| ||||||||||||||||
Sbjct: 1 gctccccctctctaatccttgctacctgggtgagagtgctttctgaatgcaatgcacctg 60
Query: 61 ggcaaggattc 71
|||||||||||
Sbjct: 61 ggcaaggattc 71
>26868_cfa-mir-500:mirbase
Length = 59
Score = 85.7 bits (43), Expect = 5e-18
Identities = 46/47 (97%)
Strand = Plus / Plus
Query: 25 cctgggtgagagtgctttccgaatgcaatgcacctgggcaaggattc 71
||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 12 cctgggtgagagtgctttctgaatgcaatgcacctgggcaaggattc 58
>27941_mml-mir-500:mirbase
Length = 84
Score = 85.7 bits (43), Expect = 5e-18
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 1 gctctccctctctcatccttcgtccctgggtgagagtgctttccgaatgcaatgcacctg 60
|||| |||||||| |||||| | |||||||||||||||| || ||||||||||||||||
Sbjct: 1 gctccccctctctaatccttgctacctgggtgagagtgctatctgaatgcaatgcacctg 60
Query: 61 ggcaaggattc 71
|||||||||||
Sbjct: 61 ggcaaggattc 71
>27942_mml-mir-501:mirbase
Length = 84
Score = 85.7 bits (43), Expect = 5e-18
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 1 gctctccctctctcatccttcgtccctgggtgagagtgctttccgaatgcaatgcacctg 60
||||| ||||||| |||||| |||||||||||||||||||||| ||||||| ||||||
Sbjct: 1 gctcttcctctctaatcctttgtccctgggtgagagtgctttctgaatgcagtgcaccca 60
Query: 61 ggcaaggattc 71
|||||||||||
Sbjct: 61 ggcaaggattc 71
>28694_hsa-mir-500a:mirbase
Length = 84
Score = 85.7 bits (43), Expect = 5e-18
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 1 gctctccctctctcatccttcgtccctgggtgagagtgctttccgaatgcaatgcacctg 60
|||| |||||||| |||||| | |||||||||||||||| || ||||||||||||||||
Sbjct: 1 gctccccctctctaatccttgctacctgggtgagagtgctgtctgaatgcaatgcacctg 60
Query: 61 ggcaaggattc 71
|||||||||||
Sbjct: 61 ggcaaggattc 71
>31040_ppy-mir-500:mirbase
Length = 84
Score = 85.7 bits (43), Expect = 5e-18
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 1 gctctccctctctcatccttcgtccctgggtgagagtgctttccgaatgcaatgcacctg 60
|||| |||||||| |||||| | |||||||||||||||| || ||||||||||||||||
Sbjct: 1 gctccccctctctaatccttgctacctgggtgagagtgctgtctgaatgcaatgcacctg 60
Query: 61 ggcaaggattc 71
|||||||||||
Sbjct: 61 ggcaaggattc 71
>30403_ptr-mir-500:mirbase
Length = 83
Score = 83.8 bits (42), Expect = 2e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 6 ccctctctcatccttcgtccctgggtgagagtgctttccgaatgcaatgcacctgggcaa 65
|||||||| |||||| | |||||||||||||||| || |||||||||||||||||||||
Sbjct: 5 ccctctctaatccttgctacctgggtgagagtgctgtctgaatgcaatgcacctgggcaa 64
Query: 66 ggattc 71
||||||
Sbjct: 65 ggattc 70
>27210_eca-mir-500:mirbase
Length = 84
Score = 79.8 bits (40), Expect = 3e-16
Identities = 64/72 (88%)
Strand = Plus / Plus
Query: 1 gctctccctctctcatccttcgtccctgggtgagagtgctttccgaatgcaatgcacctg 60
|||| |||||||| |||||| | |||||||||||||| | || ||||||||||||||||
Sbjct: 1 gctccccctctctaatccttgctacctgggtgagagtgttgtctgaatgcaatgcacctg 60
Query: 61 ggcaaggattcc 72
||||||||||||
Sbjct: 61 ggcaaggattcc 72
>34114_ssc-mir-500:mirbase
Length = 80
Score = 75.8 bits (38), Expect = 4e-15
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 6 ccctctctcatccttcgtccctgggtgagagtgctttccgaatgcaatgcacctgggcaa 65
|||||||| |||||| | |||||||||||||||| | |||||||||||||||||||||
Sbjct: 2 ccctctctaatccttgctacctgggtgagagtgctgtgtgaatgcaatgcacctgggcaa 61
Query: 66 ggattc 71
||||||
Sbjct: 62 ggattc 67
>28695_hsa-mir-500b:mirbase
Length = 79
Score = 67.9 bits (34), Expect = 1e-12
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 6 ccctctctcatccttcgtccctgggtgagagtgctttccgaatgcaatgcacctgggcaa 65
|||||||| |||||| | ||||||||||||||||||| ||||||| |||||| |||||
Sbjct: 3 ccctctctaatccttgctacctgggtgagagtgctttctgaatgcagtgcacccaggcaa 62
Query: 66 ggattc 71
||||||
Sbjct: 63 ggattc 68
>30404_ptr-mir-500-2:mirbase
Length = 79
Score = 67.9 bits (34), Expect = 1e-12
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 6 ccctctctcatccttcgtccctgggtgagagtgctttccgaatgcaatgcacctgggcaa 65
|||||||| |||||| | ||||||||||||||||||| ||||||| |||||| |||||
Sbjct: 4 ccctctctaatccttgctacctgggtgagagtgctttctgaatgcagtgcacccaggcaa 63
Query: 66 ggattc 71
||||||
Sbjct: 64 ggattc 69
>33407_bta-mir-502b:mirbase
Length = 83
Score = 61.9 bits (31), Expect = 7e-11
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 29 ggtgagagtgctttccgaatgcaatgcacctgggcaaggattc 71
|||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 28 ggtgagagtgctttgtgaatgcaatccacctgggcaaggattc 70
>32189_mmu-mir-501:mirbase
Length = 109
Score = 56.0 bits (28), Expect = 4e-09
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 7 cctctctcatccttcgtccctgggtgagagtgctttccgaatgcaatgcacctgggcaag 66
||||||| |||||| |||||||||||| | |||| | | |||||||||||| |||||||
Sbjct: 17 cctctctaatcctttgtccctgggtgaaaatgctatttgtatgcaatgcacccgggcaag 76
Query: 67 gatt 70
||||
Sbjct: 77 gatt 80
>32190_mmu-mir-501:mirbase
Length = 109
Score = 56.0 bits (28), Expect = 4e-09
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 7 cctctctcatccttcgtccctgggtgagagtgctttccgaatgcaatgcacctgggcaag 66
||||||| |||||| |||||||||||| | |||| | | |||||||||||| |||||||
Sbjct: 17 cctctctaatcctttgtccctgggtgaaaatgctatttgtatgcaatgcacccgggcaag 76
Query: 67 gatt 70
||||
Sbjct: 77 gatt 80
>32942_rno-mir-501:mirbase
Length = 84
Score = 56.0 bits (28), Expect = 4e-09
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 7 cctctctcatccttcgtccctgggtgagagtgctttccgaatgcaatgcacctgggcaag 66
||||||| |||||| |||||||||||| | |||| | | |||||||||||| |||||||
Sbjct: 7 cctctctaatcctttgtccctgggtgaaaatgctatttgtatgcaatgcacccgggcaag 66
Query: 67 gatt 70
||||
Sbjct: 67 gatt 70
>33052_rno-mir-3560:mirbase
Length = 112
Score = 56.0 bits (28), Expect = 4e-09
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 7 cctctctcatccttcgtccctgggtgagagtgctttccgaatgcaatgcacctgggcaag 66
||||||| |||||| |||||||||||| | |||| | | |||||||||||| |||||||
Sbjct: 95 cctctctaatcctttgtccctgggtgaaaatgctatttgtatgcaatgcacccgggcaag 36
Query: 67 gatt 70
||||
Sbjct: 35 gatt 32
>27213_eca-mir-502:mirbase
Length = 80
Score = 54.0 bits (27), Expect = 2e-08
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 1 gctctccctctctcatccttcgtccctgggtgagagtgctttccgaatgcaatgcacctg 60
|||| |||||||| |||||| | ||||||| |||||| || |||||||||||||||
Sbjct: 2 gctccccctctctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctg 61
Query: 61 ggcaaggattc 71
|||||||||||
Sbjct: 62 ggcaaggattc 72
>27214_eca-mir-502:mirbase
Length = 80
Score = 54.0 bits (27), Expect = 2e-08
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 1 gctctccctctctcatccttcgtccctgggtgagagtgctttccgaatgcaatgcacctg 60
|||| |||||||| |||||| | ||||||| |||||| || |||||||||||||||
Sbjct: 2 gctccccctctctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctg 61
Query: 61 ggcaaggattc 71
|||||||||||
Sbjct: 62 ggcaaggattc 72
>31042_ppy-mir-502:mirbase
Length = 86
Score = 54.0 bits (27), Expect = 2e-08
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 1 gctctccctctctcatccttcgtccctgggtgagagtgctttccgaatgcaatgcacctg 60
|||| |||||||| |||||| | ||||||| |||||| || |||||||||||||||
Sbjct: 2 gctccccctctctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctg 61
Query: 61 ggcaaggattc 71
|||||||||||
Sbjct: 62 ggcaaggattc 72
>31043_ppy-mir-502:mirbase
Length = 86
Score = 54.0 bits (27), Expect = 2e-08
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 1 gctctccctctctcatccttcgtccctgggtgagagtgctttccgaatgcaatgcacctg 60
|||| |||||||| |||||| | ||||||| |||||| || |||||||||||||||
Sbjct: 2 gctccccctctctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctg 61
Query: 61 ggcaaggattc 71
|||||||||||
Sbjct: 62 ggcaaggattc 72
>26869_cfa-mir-502:mirbase
Length = 59
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 46 aatgcaatgcacctgggcaaggattc 71
||||||||||||||||||||||||||
Sbjct: 33 aatgcaatgcacctgggcaaggattc 58
>27943_mml-mir-502:mirbase
Length = 80
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 46 aatgcaatgcacctgggcaaggattc 71
||||||||||||||||||||||||||
Sbjct: 41 aatgcaatgcacctgggcaaggattc 66
>27944_mml-mir-502:mirbase
Length = 80
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 46 aatgcaatgcacctgggcaaggattc 71
||||||||||||||||||||||||||
Sbjct: 41 aatgcaatgcacctgggcaaggattc 66
>28698_hsa-mir-502:mirbase
Length = 86
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 46 aatgcaatgcacctgggcaaggattc 71
||||||||||||||||||||||||||
Sbjct: 47 aatgcaatgcacctgggcaaggattc 72
>28699_hsa-mir-502:mirbase
Length = 86
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 46 aatgcaatgcacctgggcaaggattc 71
||||||||||||||||||||||||||
Sbjct: 47 aatgcaatgcacctgggcaaggattc 72
>30406_ptr-mir-502:mirbase
Length = 85
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 46 aatgcaatgcacctgggcaaggattc 71
||||||||||||||||||||||||||
Sbjct: 46 aatgcaatgcacctgggcaaggattc 71
>31041_ppy-mir-501:mirbase
Length = 78
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 46 aatgcaatgcacctgggcaaggattc 71
||||||||||||||||||||||||||
Sbjct: 40 aatgcaatgcacctgggcaaggattc 65
>33405_bta-mir-502a-1:mirbase
Length = 85
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 47 atgcaatgcacctgggcaaggattc 71
|||||||||||||||||||||||||
Sbjct: 47 atgcaatgcacctgggcaaggattc 71
>33406_bta-mir-502a-2:mirbase
Length = 90
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 48 tgcaatgcacctgggcaaggattc 71
||||||||||||||||||||||||
Sbjct: 55 tgcaatgcacctgggcaaggattc 78
>32188_mmu-mir-500:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 46 aatgcaatgcacctgggcaagg 67
||||||||||||||||||||||
Sbjct: 54 aatgcaatgcacctgggcaagg 75
>32941_rno-mir-500:mirbase
Length = 80
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 46 aatgcaatgcacctgggcaagg 67
||||||||||||||||||||||
Sbjct: 44 aatgcaatgcacctgggcaagg 65
